miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 109488 0.67 0.729784
Target:  5'- uCGCaGGAgcu-CCUCAUGGGCGuccucaACGCCg -3'
miRNA:   3'- -GCG-CCUagccGGAGUGCCCGC------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 165854 0.67 0.729784
Target:  5'- gGCGGGgccggaCGGUcuCUCACGgucccgaaGGCGAgGCCg -3'
miRNA:   3'- gCGCCUa-----GCCG--GAGUGC--------CCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 26564 0.67 0.727966
Target:  5'- uGCGGAccCGGCCgaugugagacuGCGGGCGAUGa- -3'
miRNA:   3'- gCGCCUa-GCCGGag---------UGCCCGCUGCgg -5'
15704 5' -61.7 NC_004065.1 + 211833 0.67 0.720668
Target:  5'- cCGCGGAcaaGGCUaucgCACGGGagucccggcCGGCGCUc -3'
miRNA:   3'- -GCGCCUag-CCGGa---GUGCCC---------GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 130095 0.67 0.720668
Target:  5'- cCGCGGcgGUcCGGCgUCAUGGacgaagaaGACGCCg -3'
miRNA:   3'- -GCGCC--UA-GCCGgAGUGCCcg------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 143271 0.67 0.756673
Target:  5'- gGCGGGggCGGCagcuUCAagggcCGaGGCGGCGUCg -3'
miRNA:   3'- gCGCCUa-GCCGg---AGU-----GC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 82663 0.67 0.765459
Target:  5'- aGCGGGUCucgugccuccuGGCCgagaggcgcagCAUGuGCGugGCCa -3'
miRNA:   3'- gCGCCUAG-----------CCGGa----------GUGCcCGCugCGG- -5'
15704 5' -61.7 NC_004065.1 + 101421 0.67 0.756673
Target:  5'- cCGUGGGggCGGCUggCGCGuGCGgauGCGCCu -3'
miRNA:   3'- -GCGCCUa-GCCGGa-GUGCcCGC---UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 151411 0.67 0.765459
Target:  5'- gGCGGGUCGGUCg---GGGUGGuCGaCCu -3'
miRNA:   3'- gCGCCUAGCCGGagugCCCGCU-GC-GG- -5'
15704 5' -61.7 NC_004065.1 + 196824 0.67 0.729784
Target:  5'- uCGUGGucaccugCGGCaggUGCGGGCGACGgUa -3'
miRNA:   3'- -GCGCCua-----GCCGga-GUGCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 32975 0.67 0.738829
Target:  5'- gGCGGAgcaugacggaGGCCUCGCGGaCcAgGCCg -3'
miRNA:   3'- gCGCCUag--------CCGGAGUGCCcGcUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 96573 0.67 0.756673
Target:  5'- cCGCcGA-CGaGCCgcgaCGCGuGGCGACGCUg -3'
miRNA:   3'- -GCGcCUaGC-CGGa---GUGC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 64876 0.67 0.756673
Target:  5'- uGCGGAccgCGGCgCgCGuCGGagaagaGCGGCGCCa -3'
miRNA:   3'- gCGCCUa--GCCG-GaGU-GCC------CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 79244 0.67 0.756673
Target:  5'- aGCGGAUCacGCUg-ACGGcGCGAUGUCu -3'
miRNA:   3'- gCGCCUAGc-CGGagUGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 77045 0.67 0.756673
Target:  5'- gCGCGGAUCGGCgacgagaaCACGGccgagauccGCGAgcugUGCCu -3'
miRNA:   3'- -GCGCCUAGCCGga------GUGCC---------CGCU----GCGG- -5'
15704 5' -61.7 NC_004065.1 + 76750 0.67 0.756673
Target:  5'- gCGCGGcgccggCGGCCUCGucauCGuccGGCGcauCGCCg -3'
miRNA:   3'- -GCGCCua----GCCGGAGU----GC---CCGCu--GCGG- -5'
15704 5' -61.7 NC_004065.1 + 17787 0.67 0.756673
Target:  5'- aGCGGGU-GGCCgUCGCGuuUGGCGCg -3'
miRNA:   3'- gCGCCUAgCCGG-AGUGCccGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 56032 0.67 0.747794
Target:  5'- -cCGGGuacUCGGCCUCGgaGGGUucGCGCCc -3'
miRNA:   3'- gcGCCU---AGCCGGAGUg-CCCGc-UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 169631 0.67 0.747794
Target:  5'- uCGuCGGAacCGGCCUCACcacgaucGGUGGCGUg -3'
miRNA:   3'- -GC-GCCUa-GCCGGAGUGc------CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 225145 0.67 0.738829
Target:  5'- aCGCGGA-CGcuCCUCcUGGGUGACcgaGCCg -3'
miRNA:   3'- -GCGCCUaGCc-GGAGuGCCCGCUG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.