Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15704 | 5' | -61.7 | NC_004065.1 | + | 166502 | 0.71 | 0.506599 |
Target: 5'- uCGCGGcgaucuaCGGCCgcgaGGGCGAgGCCa -3' miRNA: 3'- -GCGCCua-----GCCGGagugCCCGCUgCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 135605 | 0.71 | 0.524634 |
Target: 5'- cCGCugGGAgaCGGCCgucaCGCGGGUcuacGGCGCCa -3' miRNA: 3'- -GCG--CCUa-GCCGGa---GUGCCCG----CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 101848 | 0.71 | 0.524634 |
Target: 5'- uCGCGGG--GGCgUCGgGGGCGcuauCGCCg -3' miRNA: 3'- -GCGCCUagCCGgAGUgCCCGCu---GCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 96278 | 0.71 | 0.524634 |
Target: 5'- gGCGGggCGGCC--AgGGGCgucacgGACGCCg -3' miRNA: 3'- gCGCCuaGCCGGagUgCCCG------CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 169587 | 0.71 | 0.506598 |
Target: 5'- uCGCGGcucCGGCCgguUCGCGGGgGcCGUCa -3' miRNA: 3'- -GCGCCua-GCCGG---AGUGCCCgCuGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 24760 | 0.71 | 0.506598 |
Target: 5'- gGCGGccccccGUUGGCCggCGCGGGUaucucGCGCCa -3' miRNA: 3'- gCGCC------UAGCCGGa-GUGCCCGc----UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 142764 | 0.71 | 0.49768 |
Target: 5'- cCGCGacgacGA-CGGCCUgCugGuGGUGGCGCCg -3' miRNA: 3'- -GCGC-----CUaGCCGGA-GugC-CCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 103525 | 0.71 | 0.488834 |
Target: 5'- gCGCGGcgCauGGCgaCGCGGGUGcagcGCGCCa -3' miRNA: 3'- -GCGCCuaG--CCGgaGUGCCCGC----UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 200849 | 0.71 | 0.533743 |
Target: 5'- gGUGGAguUCGGCgUCgACGGG-GGCGCg -3' miRNA: 3'- gCGCCU--AGCCGgAG-UGCCCgCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 139767 | 0.71 | 0.53283 |
Target: 5'- uCGUGGucacUCuGCuCUCGCGGGCcuucgccGACGCCg -3' miRNA: 3'- -GCGCCu---AGcCG-GAGUGCCCG-------CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 18587 | 0.7 | 0.598806 |
Target: 5'- aGCGGAggGGCCUCGuuGGUGuuguCGUCa -3' miRNA: 3'- gCGCCUagCCGGAGUgcCCGCu---GCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 88968 | 0.7 | 0.552124 |
Target: 5'- gCGCGuGAUggUGGCCacCugGGGCgccuuGACGCCg -3' miRNA: 3'- -GCGC-CUA--GCCGGa-GugCCCG-----CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 197283 | 0.7 | 0.552124 |
Target: 5'- gCGCauGGG-CGGCUUCuCGcGCGACGCCg -3' miRNA: 3'- -GCG--CCUaGCCGGAGuGCcCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 35189 | 0.7 | 0.552124 |
Target: 5'- cCGUGG-UCGGCCUggagaACGuGGCGGCcaccGCCa -3' miRNA: 3'- -GCGCCuAGCCGGAg----UGC-CCGCUG----CGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 106342 | 0.7 | 0.552124 |
Target: 5'- gGCGGccCGGCgCUgcugCACGGGCagcGCGCCa -3' miRNA: 3'- gCGCCuaGCCG-GA----GUGCCCGc--UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 31077 | 0.7 | 0.589406 |
Target: 5'- uCGCGGcuggUGGCC--ACGGGCGGCGaUCa -3' miRNA: 3'- -GCGCCua--GCCGGagUGCCCGCUGC-GG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 136748 | 0.7 | 0.561387 |
Target: 5'- --gGGcgCGGUUUCGCGGGgGAUGCg -3' miRNA: 3'- gcgCCuaGCCGGAGUGCCCgCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 101925 | 0.7 | 0.570691 |
Target: 5'- gGCGGAgaagaCGGUCUCgaagaagucGCGGGUGACcGCa -3' miRNA: 3'- gCGCCUa----GCCGGAG---------UGCCCGCUG-CGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 168585 | 0.7 | 0.589406 |
Target: 5'- aGCGGGUCgGGCCggccCugGGuaGGgGCCu -3' miRNA: 3'- gCGCCUAG-CCGGa---GugCCcgCUgCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 168606 | 0.7 | 0.583779 |
Target: 5'- uGCGGAggcagaagCGGCUgcuggcgcuggugcCGCGGGCGGaGCCg -3' miRNA: 3'- gCGCCUa-------GCCGGa-------------GUGCCCGCUgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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