miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 182716 1.11 0.001178
Target:  5'- cCGCGGAUCGGCCUCACGGGCGACGCCg -3'
miRNA:   3'- -GCGCCUAGCCGGAGUGCCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 113283 0.85 0.072826
Target:  5'- aCGCGGAUCGuCUUCaccaugACGGGCGACGCCg -3'
miRNA:   3'- -GCGCCUAGCcGGAG------UGCCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 153612 0.79 0.181819
Target:  5'- -uCGGGUCGGCU---CGGGCGGCGCCa -3'
miRNA:   3'- gcGCCUAGCCGGaguGCCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 65355 0.76 0.278851
Target:  5'- gGUGGGUCGGUCggaUCGaccUGGGCGACGCg -3'
miRNA:   3'- gCGCCUAGCCGG---AGU---GCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 139902 0.74 0.344689
Target:  5'- cCGCGG---GGCCUCcgGCcGGCGGCGCCa -3'
miRNA:   3'- -GCGCCuagCCGGAG--UGcCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 191268 0.74 0.351855
Target:  5'- uGUGGAaaCGGUaCUCGCGGGC-ACGCCg -3'
miRNA:   3'- gCGCCUa-GCCG-GAGUGCCCGcUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 186920 0.74 0.359126
Target:  5'- gCGCGGAUCGGCg-C-CGGGUcgcgGAUGCCc -3'
miRNA:   3'- -GCGCCUAGCCGgaGuGCCCG----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 174140 0.74 0.366502
Target:  5'- uGCGGcAUCGGCCUggaCGCcGGauCGACGCCg -3'
miRNA:   3'- gCGCC-UAGCCGGA---GUGcCC--GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 201698 0.74 0.373982
Target:  5'- aCGCGGAcaGGCCcuguccgucuUCACgGGGCGACGUg -3'
miRNA:   3'- -GCGCCUagCCGG----------AGUG-CCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 86900 0.73 0.397033
Target:  5'- uCGCGGcgcCGGUCUCGCccucGGCGGCGCg -3'
miRNA:   3'- -GCGCCua-GCCGGAGUGc---CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 133891 0.73 0.4129
Target:  5'- gGCGGAacgaCGGgccacCCUCGCGGaGCGACcGCCu -3'
miRNA:   3'- gCGCCUa---GCC-----GGAGUGCC-CGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 91188 0.73 0.420166
Target:  5'- cCGCGGAagcgccgUCGGCgUgCGCGGcauCGGCGCCg -3'
miRNA:   3'- -GCGCCU-------AGCCGgA-GUGCCc--GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 138304 0.73 0.429152
Target:  5'- cCGUGGAcgCGGCCcugaUCGCGuGCGAgGCCu -3'
miRNA:   3'- -GCGCCUa-GCCGG----AGUGCcCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 118169 0.72 0.437418
Target:  5'- cCGCGGcggCGGCCgUCACGGcUGcCGCCg -3'
miRNA:   3'- -GCGCCua-GCCGG-AGUGCCcGCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 203965 0.72 0.445775
Target:  5'- aCGgGGAaaaUCGG-CUCGCGGuuCGACGCCg -3'
miRNA:   3'- -GCgCCU---AGCCgGAGUGCCc-GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 100777 0.72 0.45422
Target:  5'- gGCGGGcUCaGCUUCGCGcGGUGACGUg -3'
miRNA:   3'- gCGCCU-AGcCGGAGUGC-CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 59322 0.72 0.45422
Target:  5'- aGCGGcaAUCGcGCC--GCGGGCGGCGUg -3'
miRNA:   3'- gCGCC--UAGC-CGGagUGCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 120557 0.72 0.471365
Target:  5'- gGCGGcgGUCGGCgcgaGCGGGCGggaccuccgGCGCCg -3'
miRNA:   3'- gCGCC--UAGCCGgag-UGCCCGC---------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 58628 0.72 0.48006
Target:  5'- gGCGGAgucgcCGGUCUCGCGGaUGAUGUCc -3'
miRNA:   3'- gCGCCUa----GCCGGAGUGCCcGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 103525 0.71 0.488834
Target:  5'- gCGCGGcgCauGGCgaCGCGGGUGcagcGCGCCa -3'
miRNA:   3'- -GCGCCuaG--CCGgaGUGCCCGC----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.