miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 142764 0.71 0.49768
Target:  5'- cCGCGacgacGA-CGGCCUgCugGuGGUGGCGCCg -3'
miRNA:   3'- -GCGC-----CUaGCCGGA-GugC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 24760 0.71 0.506598
Target:  5'- gGCGGccccccGUUGGCCggCGCGGGUaucucGCGCCa -3'
miRNA:   3'- gCGCC------UAGCCGGa-GUGCCCGc----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 169587 0.71 0.506598
Target:  5'- uCGCGGcucCGGCCgguUCGCGGGgGcCGUCa -3'
miRNA:   3'- -GCGCCua-GCCGG---AGUGCCCgCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 166502 0.71 0.506599
Target:  5'- uCGCGGcgaucuaCGGCCgcgaGGGCGAgGCCa -3'
miRNA:   3'- -GCGCCua-----GCCGGagugCCCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 191229 0.71 0.515585
Target:  5'- gGCGGAUgGGgCUCuGCGGGCGccagacCGUCa -3'
miRNA:   3'- gCGCCUAgCCgGAG-UGCCCGCu-----GCGG- -5'
15704 5' -61.7 NC_004065.1 + 101848 0.71 0.524634
Target:  5'- uCGCGGG--GGCgUCGgGGGCGcuauCGCCg -3'
miRNA:   3'- -GCGCCUagCCGgAGUgCCCGCu---GCGG- -5'
15704 5' -61.7 NC_004065.1 + 96278 0.71 0.524634
Target:  5'- gGCGGggCGGCC--AgGGGCgucacgGACGCCg -3'
miRNA:   3'- gCGCCuaGCCGGagUgCCCG------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 135605 0.71 0.524634
Target:  5'- cCGCugGGAgaCGGCCgucaCGCGGGUcuacGGCGCCa -3'
miRNA:   3'- -GCG--CCUa-GCCGGa---GUGCCCG----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 139767 0.71 0.53283
Target:  5'- uCGUGGucacUCuGCuCUCGCGGGCcuucgccGACGCCg -3'
miRNA:   3'- -GCGCCu---AGcCG-GAGUGCCCG-------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 200849 0.71 0.533743
Target:  5'- gGUGGAguUCGGCgUCgACGGG-GGCGCg -3'
miRNA:   3'- gCGCCU--AGCCGgAG-UGCCCgCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 197283 0.7 0.552124
Target:  5'- gCGCauGGG-CGGCUUCuCGcGCGACGCCg -3'
miRNA:   3'- -GCG--CCUaGCCGGAGuGCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 35189 0.7 0.552124
Target:  5'- cCGUGG-UCGGCCUggagaACGuGGCGGCcaccGCCa -3'
miRNA:   3'- -GCGCCuAGCCGGAg----UGC-CCGCUG----CGG- -5'
15704 5' -61.7 NC_004065.1 + 106342 0.7 0.552124
Target:  5'- gGCGGccCGGCgCUgcugCACGGGCagcGCGCCa -3'
miRNA:   3'- gCGCCuaGCCG-GA----GUGCCCGc--UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 88968 0.7 0.552124
Target:  5'- gCGCGuGAUggUGGCCacCugGGGCgccuuGACGCCg -3'
miRNA:   3'- -GCGC-CUA--GCCGGa-GugCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 136748 0.7 0.561387
Target:  5'- --gGGcgCGGUUUCGCGGGgGAUGCg -3'
miRNA:   3'- gcgCCuaGCCGGAGUGCCCgCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 101925 0.7 0.570691
Target:  5'- gGCGGAgaagaCGGUCUCgaagaagucGCGGGUGACcGCa -3'
miRNA:   3'- gCGCCUa----GCCGGAG---------UGCCCGCUG-CGg -5'
15704 5' -61.7 NC_004065.1 + 168606 0.7 0.583779
Target:  5'- uGCGGAggcagaagCGGCUgcuggcgcuggugcCGCGGGCGGaGCCg -3'
miRNA:   3'- gCGCCUa-------GCCGGa-------------GUGCCCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 168585 0.7 0.589406
Target:  5'- aGCGGGUCgGGCCggccCugGGuaGGgGCCu -3'
miRNA:   3'- gCGCCUAG-CCGGa---GugCCcgCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 31077 0.7 0.589406
Target:  5'- uCGCGGcuggUGGCC--ACGGGCGGCGaUCa -3'
miRNA:   3'- -GCGCCua--GCCGGagUGCCCGCUGC-GG- -5'
15704 5' -61.7 NC_004065.1 + 98853 0.7 0.593163
Target:  5'- aGgGGGUCGGUcauauccagacgccgCUCuACGGGCGGCagguagGCCg -3'
miRNA:   3'- gCgCCUAGCCG---------------GAG-UGCCCGCUG------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.