miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 2759 0.7 0.598806
Target:  5'- gGgGGGUCGGUCUCAucCGGGaCGAC-CUc -3'
miRNA:   3'- gCgCCUAGCCGGAGU--GCCC-GCUGcGG- -5'
15704 5' -61.7 NC_004065.1 + 226591 0.7 0.598806
Target:  5'- aCGCGGAUCcgaugacgGGaCCUUAguCGGGUuGAUGCCu -3'
miRNA:   3'- -GCGCCUAG--------CC-GGAGU--GCCCG-CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 18587 0.7 0.598806
Target:  5'- aGCGGAggGGCCUCGuuGGUGuuguCGUCa -3'
miRNA:   3'- gCGCCUagCCGGAGUgcCCGCu---GCGG- -5'
15704 5' -61.7 NC_004065.1 + 136675 0.69 0.605399
Target:  5'- gGCGGGUCuGGCCggcgGCGGGcCGGCucgagcuuuuauccGCCa -3'
miRNA:   3'- gCGCCUAG-CCGGag--UGCCC-GCUG--------------CGG- -5'
15704 5' -61.7 NC_004065.1 + 224528 0.69 0.617663
Target:  5'- gCGCuGGAUCGuGCU--GCGGGCGAgacguggauguCGCCc -3'
miRNA:   3'- -GCG-CCUAGC-CGGagUGCCCGCU-----------GCGG- -5'
15704 5' -61.7 NC_004065.1 + 179744 0.69 0.617663
Target:  5'- gCGCGGAcggCGGUCUCG-GGGCccgaaucgGGCGUCu -3'
miRNA:   3'- -GCGCCUa--GCCGGAGUgCCCG--------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 129995 0.69 0.617663
Target:  5'- cCGCGGGggCGGCgg-ACGaGGCGAUGCUg -3'
miRNA:   3'- -GCGCCUa-GCCGgagUGC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 149016 0.69 0.62144
Target:  5'- uGCGGcgAUCGGaaCCUCgggcugaccucgggaGCGGGCGACGaCg -3'
miRNA:   3'- gCGCC--UAGCC--GGAG---------------UGCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 98557 0.69 0.623329
Target:  5'- uCGCGGcAUCGuCCUCgucguauccggcgaACGGGCccagccgucucuuGACGCCg -3'
miRNA:   3'- -GCGCC-UAGCcGGAG--------------UGCCCG-------------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 109845 0.69 0.627108
Target:  5'- gGCGGGg-GGCCaUCGCgcaggugccGGGCGGUGCCa -3'
miRNA:   3'- gCGCCUagCCGG-AGUG---------CCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 78635 0.69 0.627109
Target:  5'- aCGCGG-UCGGCga---GGGCGACGUg -3'
miRNA:   3'- -GCGCCuAGCCGgagugCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 55402 0.69 0.635612
Target:  5'- aGCGGAcagaagacCGGCCUgAUGGGCuguccggGGCGCg -3'
miRNA:   3'- gCGCCUa-------GCCGGAgUGCCCG-------CUGCGg -5'
15704 5' -61.7 NC_004065.1 + 19350 0.69 0.636557
Target:  5'- uCGCGGA--GGUCUCuCGGGaGGCGUCu -3'
miRNA:   3'- -GCGCCUagCCGGAGuGCCCgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 45825 0.69 0.640336
Target:  5'- uGCGGGUgggcauguaucggacCGGCCgCACGGgacGCGAUgGCCg -3'
miRNA:   3'- gCGCCUA---------------GCCGGaGUGCC---CGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 109203 0.69 0.645058
Target:  5'- gGCGGcgccUCGGCCUCuuccugcucggcgACGGGaGACGgCg -3'
miRNA:   3'- gCGCCu---AGCCGGAG-------------UGCCCgCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 184841 0.69 0.65261
Target:  5'- uGCuGGGuUCGGCCgagggaucgagucgaGCGGGCggcggGACGCCg -3'
miRNA:   3'- gCG-CCU-AGCCGGag-------------UGCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 168175 0.69 0.655439
Target:  5'- gCGCGGggCGcGaca-GCGGcGCGACGCCu -3'
miRNA:   3'- -GCGCCuaGC-CggagUGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 17430 0.68 0.663918
Target:  5'- aGCGGucguuuggCGGCCUCuCuGGCGACacgugaaGCCa -3'
miRNA:   3'- gCGCCua------GCCGGAGuGcCCGCUG-------CGG- -5'
15704 5' -61.7 NC_004065.1 + 78294 0.68 0.663919
Target:  5'- aGCGGcUCucgagGGCCUCGgacugcgUGGGCGAC-CCg -3'
miRNA:   3'- gCGCCuAG-----CCGGAGU-------GCCCGCUGcGG- -5'
15704 5' -61.7 NC_004065.1 + 126255 0.68 0.66486
Target:  5'- gGCGGAUCGaGCCgcccagCGCGuucaGCaGCGCCu -3'
miRNA:   3'- gCGCCUAGC-CGGa-----GUGCc---CGcUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.