miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 68888 0.68 0.66486
Target:  5'- uGCaGA-CGGCCgaggugaagCugGaGGUGACGCCg -3'
miRNA:   3'- gCGcCUaGCCGGa--------GugC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 126255 0.68 0.66486
Target:  5'- gGCGGAUCGaGCCgcccagCGCGuucaGCaGCGCCu -3'
miRNA:   3'- gCGCCUAGC-CGGa-----GUGCc---CGcUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 101582 0.68 0.66486
Target:  5'- cCGCGGAc--GCCUCcgccGCGcucagacucgguGGCGGCGCCg -3'
miRNA:   3'- -GCGCCUagcCGGAG----UGC------------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 204533 0.68 0.66486
Target:  5'- uCGUGG-UCGccagacGCCUCGuCGGGCGGCGg- -3'
miRNA:   3'- -GCGCCuAGC------CGGAGU-GCCCGCUGCgg -5'
15704 5' -61.7 NC_004065.1 + 23624 0.68 0.66486
Target:  5'- gGCGGGUggacgggcggcUGGCCU--CGGGCcGACGCa -3'
miRNA:   3'- gCGCCUA-----------GCCGGAguGCCCG-CUGCGg -5'
15704 5' -61.7 NC_004065.1 + 141552 0.68 0.674257
Target:  5'- aCGCGcucuUCGGCgUCGCGcGcaagaccuGCGACGCCc -3'
miRNA:   3'- -GCGCcu--AGCCGgAGUGC-C--------CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 165395 0.68 0.678009
Target:  5'- gCGCGGucgaUGGCCuucuggaaguccgucUCuaggGCGGGCGuCGCCg -3'
miRNA:   3'- -GCGCCua--GCCGG---------------AG----UGCCCGCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 120125 0.68 0.681755
Target:  5'- gGCGGA-CGaGCCgggaccccccgaCGCGgccgcGGCGACGCCg -3'
miRNA:   3'- gCGCCUaGC-CGGa-----------GUGC-----CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 150425 0.68 0.683626
Target:  5'- aGCGGGUcCGGCCUguccaACaGGUGACacucgGCCa -3'
miRNA:   3'- gCGCCUA-GCCGGAg----UGcCCGCUG-----CGG- -5'
15704 5' -61.7 NC_004065.1 + 56141 0.68 0.683627
Target:  5'- gGCGGcggCGGCCcacacaCACGGcGUGACGgCg -3'
miRNA:   3'- gCGCCua-GCCGGa-----GUGCC-CGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 153636 0.68 0.692959
Target:  5'- -uCGGAcggCGGCgagCUCAucCGcGGCGGCGCCg -3'
miRNA:   3'- gcGCCUa--GCCG---GAGU--GC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 105934 0.68 0.692959
Target:  5'- aGcCGGAUgGGCCUgCAccCGGGCuucGCGCUg -3'
miRNA:   3'- gC-GCCUAgCCGGA-GU--GCCCGc--UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 104972 0.68 0.692959
Target:  5'- gCGCGGAcCugcgaacugacgGGCCUgaACGGGCGGCugugugacgaGCCg -3'
miRNA:   3'- -GCGCCUaG------------CCGGAg-UGCCCGCUG----------CGG- -5'
15704 5' -61.7 NC_004065.1 + 187403 0.68 0.692959
Target:  5'- gCGCGGugUGGCgUCGaGGGCGAgCGCa -3'
miRNA:   3'- -GCGCCuaGCCGgAGUgCCCGCU-GCGg -5'
15704 5' -61.7 NC_004065.1 + 219839 0.68 0.702248
Target:  5'- gGUGGuaucggUGGCCUguCGGGUGACGg- -3'
miRNA:   3'- gCGCCua----GCCGGAguGCCCGCUGCgg -5'
15704 5' -61.7 NC_004065.1 + 4412 0.68 0.702248
Target:  5'- aGCGG--UGGCCacgGCGGGCcuGACGCUg -3'
miRNA:   3'- gCGCCuaGCCGGag-UGCCCG--CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 128402 0.68 0.702248
Target:  5'- uGUGGGggccgagCGGCa--GCGgcGGCGGCGCCg -3'
miRNA:   3'- gCGCCUa------GCCGgagUGC--CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 103780 0.68 0.702248
Target:  5'- gGCGGcUCGaucCCcgCACGGGCgugaaGACGCCc -3'
miRNA:   3'- gCGCCuAGCc--GGa-GUGCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 63510 0.68 0.711486
Target:  5'- uGCGGAU-GGCCUCGCccucgcGGCcguaGAuCGCCg -3'
miRNA:   3'- gCGCCUAgCCGGAGUGc-----CCG----CU-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 195782 0.68 0.711486
Target:  5'- aCGCaGGUCGcGUCUC-UGGGCGcCGCg -3'
miRNA:   3'- -GCGcCUAGC-CGGAGuGCCCGCuGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.