miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 3763 0.66 0.799518
Target:  5'- uCGUGGAUCGaGUugacagaaaauUUCGCGGGCa--GCCu -3'
miRNA:   3'- -GCGCCUAGC-CG-----------GAGUGCCCGcugCGG- -5'
15704 5' -61.7 NC_004065.1 + 203129 0.66 0.799518
Target:  5'- uGCGGucgagCGGCCUCugGaccGGcCGGCGgUg -3'
miRNA:   3'- gCGCCua---GCCGGAGugC---CC-GCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 195435 0.66 0.799518
Target:  5'- uCGCcaGGAaCGGCgUCGCGGaGCGcacggucuGCGUCg -3'
miRNA:   3'- -GCG--CCUaGCCGgAGUGCC-CGC--------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 106113 0.66 0.799518
Target:  5'- gGUGGAgaUgGGCCUggggUACgGGGCGACGaCg -3'
miRNA:   3'- gCGCCU--AgCCGGA----GUG-CCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 141634 0.66 0.799518
Target:  5'- gGCGGcUCGGCgaCGgaGGGCGGuggcggUGCCg -3'
miRNA:   3'- gCGCCuAGCCGgaGUg-CCCGCU------GCGG- -5'
15704 5' -61.7 NC_004065.1 + 103732 0.66 0.799517
Target:  5'- aCGCGccuccuUCGGCgucggUUCGCGcGGCGGgGCCu -3'
miRNA:   3'- -GCGCcu----AGCCG-----GAGUGC-CCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 36155 0.66 0.799517
Target:  5'- gGUGGAUCGGCgggagucgcCGCGGacgaaGCGACGgCa -3'
miRNA:   3'- gCGCCUAGCCGga-------GUGCC-----CGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 224797 0.66 0.799517
Target:  5'- aGCGGG-CGGCagCACGGucaCGACcGCCg -3'
miRNA:   3'- gCGCCUaGCCGgaGUGCCc--GCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 62098 0.66 0.799517
Target:  5'- aGCGGcagCGGCggucguuacgCUCGCGGGaGGCGgCa -3'
miRNA:   3'- gCGCCua-GCCG----------GAGUGCCCgCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 65808 0.66 0.799517
Target:  5'- cCGCGGAUCgaGGCgaUCGUGaacGCGAUGCCg -3'
miRNA:   3'- -GCGCCUAG--CCGg-AGUGCc--CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 463 0.66 0.799517
Target:  5'- aCGCGcGcucgccugaGUCaGCCUC-CGGGCcgcGCGCCg -3'
miRNA:   3'- -GCGC-C---------UAGcCGGAGuGCCCGc--UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 198330 0.66 0.797029
Target:  5'- cCGCGGAaCGGCCagaucccccucagcUCGCcgGGGUccuuCGCCa -3'
miRNA:   3'- -GCGCCUaGCCGG--------------AGUG--CCCGcu--GCGG- -5'
15704 5' -61.7 NC_004065.1 + 29481 0.66 0.791179
Target:  5'- gCGCGGugcucUUGGUCagGCGuuccagguacucGGUGACGCCg -3'
miRNA:   3'- -GCGCCu----AGCCGGagUGC------------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 167414 0.66 0.791179
Target:  5'- cCGCGGcugCuGCCgccggCGgGGGCGGCGgCg -3'
miRNA:   3'- -GCGCCua-GcCGGa----GUgCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 95781 0.66 0.791179
Target:  5'- uGCGGcUCGGUg--ACGGGUuccagGGCGCCa -3'
miRNA:   3'- gCGCCuAGCCGgagUGCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 200786 0.66 0.791179
Target:  5'- gCGCGG--CGGUg--GCGGGCGACGgCg -3'
miRNA:   3'- -GCGCCuaGCCGgagUGCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 194443 0.66 0.791179
Target:  5'- gGCGccUCGGUCgaaGCGguugggcacGGCGGCGCCg -3'
miRNA:   3'- gCGCcuAGCCGGag-UGC---------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 150351 0.66 0.791179
Target:  5'- uGCGGAugucgggcacguUCGGCacCUCcCGGGUcaucaGCGCCg -3'
miRNA:   3'- gCGCCU------------AGCCG--GAGuGCCCGc----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 113927 0.66 0.791179
Target:  5'- gCGCGuGucgacgacgCGGCgCUCGgGGGCugggacggaGACGCCg -3'
miRNA:   3'- -GCGC-Cua-------GCCG-GAGUgCCCG---------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 66625 0.66 0.791179
Target:  5'- cCGCGGGcugCGGCgCU-GCGuGGCGgACGCg -3'
miRNA:   3'- -GCGCCUa--GCCG-GAgUGC-CCGC-UGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.