miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 132424 0.66 0.782718
Target:  5'- aGCGGcggCGGCCUCcuucgACGuGUuGCGCCg -3'
miRNA:   3'- gCGCCua-GCCGGAG-----UGCcCGcUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 62062 0.66 0.782718
Target:  5'- aGCGGcaggugaggauUCGGaUUCAgGGGCGACGgCa -3'
miRNA:   3'- gCGCCu----------AGCCgGAGUgCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 61628 0.66 0.782718
Target:  5'- aCGaCGGGUCGGUCUggaugagACGGuuGGCGCUg -3'
miRNA:   3'- -GC-GCCUAGCCGGAg------UGCCcgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 153327 0.66 0.782718
Target:  5'- gGCGGAUCcuggagaagGGCCUCccCaGGCugaucgucaggGACGCCu -3'
miRNA:   3'- gCGCCUAG---------CCGGAGu-GcCCG-----------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 91439 0.66 0.782718
Target:  5'- aGCGGAcugaaGGCCUgGaCGccgaaGCGGCGCCu -3'
miRNA:   3'- gCGCCUag---CCGGAgU-GCc----CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 159972 0.66 0.782718
Target:  5'- uCGCGGcgaucgUGGCCgUCuccaccgugACGaGCGACGCCa -3'
miRNA:   3'- -GCGCCua----GCCGG-AG---------UGCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 30046 0.66 0.782718
Target:  5'- gGCGGAguucUCGGCgCUCgaucccagagACGGGac-CGCCg -3'
miRNA:   3'- gCGCCU----AGCCG-GAG----------UGCCCgcuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 201799 0.66 0.774142
Target:  5'- aGgGGGUUGGUCUCcugcuugcCGGGCGucCGCa -3'
miRNA:   3'- gCgCCUAGCCGGAGu-------GCCCGCu-GCGg -5'
15704 5' -61.7 NC_004065.1 + 59933 0.66 0.774142
Target:  5'- uCGCGGcgCGGCCagaagCcCGGaGUGGUGCCc -3'
miRNA:   3'- -GCGCCuaGCCGGa----GuGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 142709 0.66 0.774142
Target:  5'- -cUGGAcCGGCgUCGgGGGUccugGGCGCCu -3'
miRNA:   3'- gcGCCUaGCCGgAGUgCCCG----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 82663 0.67 0.765459
Target:  5'- aGCGGGUCucgugccuccuGGCCgagaggcgcagCAUGuGCGugGCCa -3'
miRNA:   3'- gCGCCUAG-----------CCGGa----------GUGCcCGCugCGG- -5'
15704 5' -61.7 NC_004065.1 + 130073 0.67 0.765459
Target:  5'- cCGCGGcggUGGUCgacUAC-GGCGAUGCCg -3'
miRNA:   3'- -GCGCCua-GCCGGa--GUGcCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 151411 0.67 0.765459
Target:  5'- gGCGGGUCGGUCg---GGGUGGuCGaCCu -3'
miRNA:   3'- gCGCCUAGCCGGagugCCCGCU-GC-GG- -5'
15704 5' -61.7 NC_004065.1 + 34640 0.67 0.765459
Target:  5'- cCGUGGAagaccUCGGCCgUCACGGuGUccagGAagGCCg -3'
miRNA:   3'- -GCGCCU-----AGCCGG-AGUGCC-CG----CUg-CGG- -5'
15704 5' -61.7 NC_004065.1 + 78651 0.67 0.765458
Target:  5'- --aGaGAUCGGCCgccagcgcaGCGGcCGGCGCCg -3'
miRNA:   3'- gcgC-CUAGCCGGag-------UGCCcGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 121222 0.67 0.765458
Target:  5'- cCGCGGcugaaCGGCCgcCACGccaGGUucGACGCCg -3'
miRNA:   3'- -GCGCCua---GCCGGa-GUGC---CCG--CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 48581 0.67 0.764584
Target:  5'- aGCGGGcacggagUCGGCCUCcaggagGCuGGCGAUGaCa -3'
miRNA:   3'- gCGCCU-------AGCCGGAG------UGcCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 149927 0.67 0.764584
Target:  5'- gCGCGGcUCGGCaggagGCGGGCuugauccacagacGGCGUCa -3'
miRNA:   3'- -GCGCCuAGCCGgag--UGCCCG-------------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 96573 0.67 0.756673
Target:  5'- cCGCcGA-CGaGCCgcgaCGCGuGGCGACGCUg -3'
miRNA:   3'- -GCGcCUaGC-CGGa---GUGC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 201634 0.67 0.756673
Target:  5'- cCGUGGAacacccCGGUgUCcCGGuaGACGCCg -3'
miRNA:   3'- -GCGCCUa-----GCCGgAGuGCCcgCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.