miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 88818 0.67 0.756673
Target:  5'- aCGCGGAUCuGCCUguCGu-CGGCGCg -3'
miRNA:   3'- -GCGCCUAGcCGGAguGCccGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 101421 0.67 0.756673
Target:  5'- cCGUGGGggCGGCUggCGCGuGCGgauGCGCCu -3'
miRNA:   3'- -GCGCCUa-GCCGGa-GUGCcCGC---UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 17787 0.67 0.756673
Target:  5'- aGCGGGU-GGCCgUCGCGuuUGGCGCg -3'
miRNA:   3'- gCGCCUAgCCGG-AGUGCccGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 76750 0.67 0.756673
Target:  5'- gCGCGGcgccggCGGCCUCGucauCGuccGGCGcauCGCCg -3'
miRNA:   3'- -GCGCCua----GCCGGAGU----GC---CCGCu--GCGG- -5'
15704 5' -61.7 NC_004065.1 + 79244 0.67 0.756673
Target:  5'- aGCGGAUCacGCUg-ACGGcGCGAUGUCu -3'
miRNA:   3'- gCGCCUAGc-CGGagUGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 64876 0.67 0.756673
Target:  5'- uGCGGAccgCGGCgCgCGuCGGagaagaGCGGCGCCa -3'
miRNA:   3'- gCGCCUa--GCCG-GaGU-GCC------CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 96573 0.67 0.756673
Target:  5'- cCGCcGA-CGaGCCgcgaCGCGuGGCGACGCUg -3'
miRNA:   3'- -GCGcCUaGC-CGGa---GUGC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 201634 0.67 0.756673
Target:  5'- cCGUGGAacacccCGGUgUCcCGGuaGACGCCg -3'
miRNA:   3'- -GCGCCUa-----GCCGgAGuGCCcgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 152889 0.67 0.756673
Target:  5'- uGCGGGUCGcGCC--GCaGGCaGAUGCUg -3'
miRNA:   3'- gCGCCUAGC-CGGagUGcCCG-CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 179674 0.67 0.747795
Target:  5'- aGCGGGggGGCUcgggaUCGCGGcG-GugGCCa -3'
miRNA:   3'- gCGCCUagCCGG-----AGUGCC-CgCugCGG- -5'
15704 5' -61.7 NC_004065.1 + 82758 0.67 0.747795
Target:  5'- gCGCaGAagaCGGCCUCggagagcagGCGuccGGUGGCGCCg -3'
miRNA:   3'- -GCGcCUa--GCCGGAG---------UGC---CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 187033 0.67 0.747795
Target:  5'- gGCGGcgCGGCgUC-UGaGGUGAUGCg -3'
miRNA:   3'- gCGCCuaGCCGgAGuGC-CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 103711 0.67 0.747795
Target:  5'- gGCGGGgaGcGCCUgGCGGGCGugauCGUg -3'
miRNA:   3'- gCGCCUagC-CGGAgUGCCCGCu---GCGg -5'
15704 5' -61.7 NC_004065.1 + 176163 0.67 0.747795
Target:  5'- -aCGGAgUGGCCaUCcCGGcGCGACcGCCg -3'
miRNA:   3'- gcGCCUaGCCGG-AGuGCC-CGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 169631 0.67 0.747794
Target:  5'- uCGuCGGAacCGGCCUCACcacgaucGGUGGCGUg -3'
miRNA:   3'- -GC-GCCUa-GCCGGAGUGc------CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 56032 0.67 0.747794
Target:  5'- -cCGGGuacUCGGCCUCGgaGGGUucGCGCCc -3'
miRNA:   3'- gcGCCU---AGCCGGAGUg-CCCGc-UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 204299 0.67 0.746902
Target:  5'- aCGUcu-UCGGCCguuucuacuguuaUCGCGGGCccccggacGACGCCa -3'
miRNA:   3'- -GCGccuAGCCGG-------------AGUGCCCG--------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 131431 0.67 0.738829
Target:  5'- uGCGGAcCGGCgUCAagagacggcUGGGCccguuCGCCg -3'
miRNA:   3'- gCGCCUaGCCGgAGU---------GCCCGcu---GCGG- -5'
15704 5' -61.7 NC_004065.1 + 6926 0.67 0.738829
Target:  5'- uGCGGGcaCGGCCUC---GGCGucCGCCg -3'
miRNA:   3'- gCGCCUa-GCCGGAGugcCCGCu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 225145 0.67 0.738829
Target:  5'- aCGCGGA-CGcuCCUCcUGGGUGACcgaGCCg -3'
miRNA:   3'- -GCGCCUaGCc-GGAGuGCCCGCUG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.