miRNA display CGI


Results 81 - 100 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 32975 0.67 0.738829
Target:  5'- gGCGGAgcaugacggaGGCCUCGCGGaCcAgGCCg -3'
miRNA:   3'- gCGCCUag--------CCGGAGUGCCcGcUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 141551 0.67 0.736124
Target:  5'- gGgGGGUgacggacuuuucgcUGGCCUCucugcGCGaGGCGACcGCCa -3'
miRNA:   3'- gCgCCUA--------------GCCGGAG-----UGC-CCGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 141347 0.67 0.729785
Target:  5'- aCGCGGAcgUCGuCCgcUCGCGggugcuGGCGGCGCUc -3'
miRNA:   3'- -GCGCCU--AGCcGG--AGUGC------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 29383 0.67 0.729785
Target:  5'- aCGCcGAUCucGCCUCGaGcGCGACGCCa -3'
miRNA:   3'- -GCGcCUAGc-CGGAGUgCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 165854 0.67 0.729784
Target:  5'- gGCGGGgccggaCGGUcuCUCACGgucccgaaGGCGAgGCCg -3'
miRNA:   3'- gCGCCUa-----GCCG--GAGUGC--------CCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 109488 0.67 0.729784
Target:  5'- uCGCaGGAgcu-CCUCAUGGGCGuccucaACGCCg -3'
miRNA:   3'- -GCG-CCUagccGGAGUGCCCGC------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 196824 0.67 0.729784
Target:  5'- uCGUGGucaccugCGGCaggUGCGGGCGACGgUa -3'
miRNA:   3'- -GCGCCua-----GCCGga-GUGCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 164457 0.67 0.728876
Target:  5'- uCGCGGuacaGGUaCUCGCGacccgccGGCGACGCg -3'
miRNA:   3'- -GCGCCuag-CCG-GAGUGC-------CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 26564 0.67 0.727966
Target:  5'- uGCGGAccCGGCCgaugugagacuGCGGGCGAUGa- -3'
miRNA:   3'- gCGCCUa-GCCGGag---------UGCCCGCUGCgg -5'
15704 5' -61.7 NC_004065.1 + 198010 0.67 0.720668
Target:  5'- uGCGcGAU-GGCCUCggagGCGGucGCGGuCGCCg -3'
miRNA:   3'- gCGC-CUAgCCGGAG----UGCC--CGCU-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 30495 0.67 0.720668
Target:  5'- gGCuGGAggcgccCGGCUgcgcgCACGuGGCGGcCGCCg -3'
miRNA:   3'- gCG-CCUa-----GCCGGa----GUGC-CCGCU-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 93484 0.67 0.720668
Target:  5'- uGaCGGuggCGGCCUCuuCGGGCG-UGaCCa -3'
miRNA:   3'- gC-GCCua-GCCGGAGu-GCCCGCuGC-GG- -5'
15704 5' -61.7 NC_004065.1 + 55879 0.67 0.720668
Target:  5'- gGCGucGAUCGGCgUC-CaGGCcGAUGCCg -3'
miRNA:   3'- gCGC--CUAGCCGgAGuGcCCG-CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 211833 0.67 0.720668
Target:  5'- cCGCGGAcaaGGCUaucgCACGGGagucccggcCGGCGCUc -3'
miRNA:   3'- -GCGCCUag-CCGGa---GUGCCC---------GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 130095 0.67 0.720668
Target:  5'- cCGCGGcgGUcCGGCgUCAUGGacgaagaaGACGCCg -3'
miRNA:   3'- -GCGCC--UA-GCCGgAGUGCCcg------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 62380 0.67 0.720668
Target:  5'- gGCGGGgguggUGGCggCGgGGGUGGCgGCCg -3'
miRNA:   3'- gCGCCUa----GCCGgaGUgCCCGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 115634 0.67 0.720668
Target:  5'- gGCGGGguaGGCUggacggCAUGGGUcucGCGCCg -3'
miRNA:   3'- gCGCCUag-CCGGa-----GUGCCCGc--UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 123004 0.67 0.720668
Target:  5'- uCGUGGGugUCGGUCUC-CGGcgagcGUGACGUCc -3'
miRNA:   3'- -GCGCCU--AGCCGGAGuGCC-----CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 168835 0.68 0.711487
Target:  5'- cCGCGGGUCcuGGCCUaCGcCGGGUucGGCGguuCCa -3'
miRNA:   3'- -GCGCCUAG--CCGGA-GU-GCCCG--CUGC---GG- -5'
15704 5' -61.7 NC_004065.1 + 157938 0.68 0.711487
Target:  5'- gGC-GAUCaGGCCgCGCaGGGUGGCGUCc -3'
miRNA:   3'- gCGcCUAG-CCGGaGUG-CCCGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.