miRNA display CGI


Results 1 - 20 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 463 0.66 0.799517
Target:  5'- aCGCGcGcucgccugaGUCaGCCUC-CGGGCcgcGCGCCg -3'
miRNA:   3'- -GCGC-C---------UAGcCGGAGuGCCCGc--UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 2759 0.7 0.598806
Target:  5'- gGgGGGUCGGUCUCAucCGGGaCGAC-CUc -3'
miRNA:   3'- gCgCCUAGCCGGAGU--GCCC-GCUGcGG- -5'
15704 5' -61.7 NC_004065.1 + 3763 0.66 0.799518
Target:  5'- uCGUGGAUCGaGUugacagaaaauUUCGCGGGCa--GCCu -3'
miRNA:   3'- -GCGCCUAGC-CG-----------GAGUGCCCGcugCGG- -5'
15704 5' -61.7 NC_004065.1 + 4412 0.68 0.702248
Target:  5'- aGCGG--UGGCCacgGCGGGCcuGACGCUg -3'
miRNA:   3'- gCGCCuaGCCGGag-UGCCCG--CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 6926 0.67 0.738829
Target:  5'- uGCGGGcaCGGCCUC---GGCGucCGCCg -3'
miRNA:   3'- gCGCCUa-GCCGGAGugcCCGCu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 16183 0.66 0.815801
Target:  5'- aGgGGGUgcuccgagauaCGGUCUCgaccacgauGCGGGCGAUGUUa -3'
miRNA:   3'- gCgCCUA-----------GCCGGAG---------UGCCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 17430 0.68 0.663918
Target:  5'- aGCGGucguuuggCGGCCUCuCuGGCGACacgugaaGCCa -3'
miRNA:   3'- gCGCCua------GCCGGAGuGcCCGCUG-------CGG- -5'
15704 5' -61.7 NC_004065.1 + 17787 0.67 0.756673
Target:  5'- aGCGGGU-GGCCgUCGCGuuUGGCGCg -3'
miRNA:   3'- gCGCCUAgCCGG-AGUGCccGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 18587 0.7 0.598806
Target:  5'- aGCGGAggGGCCUCGuuGGUGuuguCGUCa -3'
miRNA:   3'- gCGCCUagCCGGAGUgcCCGCu---GCGG- -5'
15704 5' -61.7 NC_004065.1 + 19350 0.69 0.636557
Target:  5'- uCGCGGA--GGUCUCuCGGGaGGCGUCu -3'
miRNA:   3'- -GCGCCUagCCGGAGuGCCCgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 23624 0.68 0.66486
Target:  5'- gGCGGGUggacgggcggcUGGCCU--CGGGCcGACGCa -3'
miRNA:   3'- gCGCCUA-----------GCCGGAguGCCCG-CUGCGg -5'
15704 5' -61.7 NC_004065.1 + 24263 0.66 0.807727
Target:  5'- uGCGGcacUCGGUgagCUCACGGcucGCGGCcCCg -3'
miRNA:   3'- gCGCCu--AGCCG---GAGUGCC---CGCUGcGG- -5'
15704 5' -61.7 NC_004065.1 + 24760 0.71 0.506598
Target:  5'- gGCGGccccccGUUGGCCggCGCGGGUaucucGCGCCa -3'
miRNA:   3'- gCGCC------UAGCCGGa-GUGCCCGc----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 26564 0.67 0.727966
Target:  5'- uGCGGAccCGGCCgaugugagacuGCGGGCGAUGa- -3'
miRNA:   3'- gCGCCUa-GCCGGag---------UGCCCGCUGCgg -5'
15704 5' -61.7 NC_004065.1 + 29383 0.67 0.729785
Target:  5'- aCGCcGAUCucGCCUCGaGcGCGACGCCa -3'
miRNA:   3'- -GCGcCUAGc-CGGAGUgCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 29481 0.66 0.791179
Target:  5'- gCGCGGugcucUUGGUCagGCGuuccagguacucGGUGACGCCg -3'
miRNA:   3'- -GCGCCu----AGCCGGagUGC------------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 30046 0.66 0.782718
Target:  5'- gGCGGAguucUCGGCgCUCgaucccagagACGGGac-CGCCg -3'
miRNA:   3'- gCGCCU----AGCCG-GAG----------UGCCCgcuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 30495 0.67 0.720668
Target:  5'- gGCuGGAggcgccCGGCUgcgcgCACGuGGCGGcCGCCg -3'
miRNA:   3'- gCG-CCUa-----GCCGGa----GUGC-CCGCU-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 31077 0.7 0.589406
Target:  5'- uCGCGGcuggUGGCC--ACGGGCGGCGaUCa -3'
miRNA:   3'- -GCGCCua--GCCGGagUGCCCGCUGC-GG- -5'
15704 5' -61.7 NC_004065.1 + 32657 0.66 0.815
Target:  5'- uGCaGGAggaguuCCUCGCGGGCGcgguucucgcgcaGCGCCu -3'
miRNA:   3'- gCG-CCUagcc--GGAGUGCCCGC-------------UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.