miRNA display CGI


Results 21 - 40 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 32975 0.67 0.738829
Target:  5'- gGCGGAgcaugacggaGGCCUCGCGGaCcAgGCCg -3'
miRNA:   3'- gCGCCUag--------CCGGAGUGCCcGcUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 33388 0.66 0.807727
Target:  5'- gCGCGGA---GCCUCuCGaGGCGcuCGCCc -3'
miRNA:   3'- -GCGCCUagcCGGAGuGC-CCGCu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 33469 0.66 0.807727
Target:  5'- aCGCGuucgCGGCCg--UGGGCGccuacGCGCCg -3'
miRNA:   3'- -GCGCcua-GCCGGaguGCCCGC-----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 34640 0.67 0.765459
Target:  5'- cCGUGGAagaccUCGGCCgUCACGGuGUccagGAagGCCg -3'
miRNA:   3'- -GCGCCU-----AGCCGG-AGUGCC-CG----CUg-CGG- -5'
15704 5' -61.7 NC_004065.1 + 35189 0.7 0.552124
Target:  5'- cCGUGG-UCGGCCUggagaACGuGGCGGCcaccGCCa -3'
miRNA:   3'- -GCGCCuAGCCGGAg----UGC-CCGCUG----CGG- -5'
15704 5' -61.7 NC_004065.1 + 36155 0.66 0.799517
Target:  5'- gGUGGAUCGGCgggagucgcCGCGGacgaaGCGACGgCa -3'
miRNA:   3'- gCGCCUAGCCGga-------GUGCC-----CGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 45825 0.69 0.640336
Target:  5'- uGCGGGUgggcauguaucggacCGGCCgCACGGgacGCGAUgGCCg -3'
miRNA:   3'- gCGCCUA---------------GCCGGaGUGCC---CGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 48581 0.67 0.764584
Target:  5'- aGCGGGcacggagUCGGCCUCcaggagGCuGGCGAUGaCa -3'
miRNA:   3'- gCGCCU-------AGCCGGAG------UGcCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 55402 0.69 0.635612
Target:  5'- aGCGGAcagaagacCGGCCUgAUGGGCuguccggGGCGCg -3'
miRNA:   3'- gCGCCUa-------GCCGGAgUGCCCG-------CUGCGg -5'
15704 5' -61.7 NC_004065.1 + 55879 0.67 0.720668
Target:  5'- gGCGucGAUCGGCgUC-CaGGCcGAUGCCg -3'
miRNA:   3'- gCGC--CUAGCCGgAGuGcCCG-CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 56032 0.67 0.747794
Target:  5'- -cCGGGuacUCGGCCUCGgaGGGUucGCGCCc -3'
miRNA:   3'- gcGCCU---AGCCGGAGUg-CCCGc-UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 56141 0.68 0.683627
Target:  5'- gGCGGcggCGGCCcacacaCACGGcGUGACGgCg -3'
miRNA:   3'- gCGCCua-GCCGGa-----GUGCC-CGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 58628 0.72 0.48006
Target:  5'- gGCGGAgucgcCGGUCUCGCGGaUGAUGUCc -3'
miRNA:   3'- gCGCCUa----GCCGGAGUGCCcGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 59322 0.72 0.45422
Target:  5'- aGCGGcaAUCGcGCC--GCGGGCGGCGUg -3'
miRNA:   3'- gCGCC--UAGC-CGGagUGCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 59933 0.66 0.774142
Target:  5'- uCGCGGcgCGGCCagaagCcCGGaGUGGUGCCc -3'
miRNA:   3'- -GCGCCuaGCCGGa----GuGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 60156 0.66 0.807727
Target:  5'- -aCGGAUCGGCgCccgccaugCACaGGuCGACGCUg -3'
miRNA:   3'- gcGCCUAGCCG-Ga-------GUGcCC-GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 60569 0.66 0.807727
Target:  5'- aCGcCGGGUCcGCa-CACGGcGgGGCGCCc -3'
miRNA:   3'- -GC-GCCUAGcCGgaGUGCC-CgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 61628 0.66 0.782718
Target:  5'- aCGaCGGGUCGGUCUggaugagACGGuuGGCGCUg -3'
miRNA:   3'- -GC-GCCUAGCCGGAg------UGCCcgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 62062 0.66 0.782718
Target:  5'- aGCGGcaggugaggauUCGGaUUCAgGGGCGACGgCa -3'
miRNA:   3'- gCGCCu----------AGCCgGAGUgCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 62098 0.66 0.799517
Target:  5'- aGCGGcagCGGCggucguuacgCUCGCGGGaGGCGgCa -3'
miRNA:   3'- gCGCCua-GCCG----------GAGUGCCCgCUGCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.