miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 62380 0.67 0.720668
Target:  5'- gGCGGGgguggUGGCggCGgGGGUGGCgGCCg -3'
miRNA:   3'- gCGCCUa----GCCGgaGUgCCCGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 63510 0.68 0.711486
Target:  5'- uGCGGAU-GGCCUCGCccucgcGGCcguaGAuCGCCg -3'
miRNA:   3'- gCGCCUAgCCGGAGUGc-----CCG----CU-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 64876 0.67 0.756673
Target:  5'- uGCGGAccgCGGCgCgCGuCGGagaagaGCGGCGCCa -3'
miRNA:   3'- gCGCCUa--GCCG-GaGU-GCC------CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 65355 0.76 0.278851
Target:  5'- gGUGGGUCGGUCggaUCGaccUGGGCGACGCg -3'
miRNA:   3'- gCGCCUAGCCGG---AGU---GCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 65808 0.66 0.799517
Target:  5'- cCGCGGAUCgaGGCgaUCGUGaacGCGAUGCCg -3'
miRNA:   3'- -GCGCCUAG--CCGg-AGUGCc--CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 66625 0.66 0.791179
Target:  5'- cCGCGGGcugCGGCgCU-GCGuGGCGgACGCg -3'
miRNA:   3'- -GCGCCUa--GCCG-GAgUGC-CCGC-UGCGg -5'
15704 5' -61.7 NC_004065.1 + 66634 0.66 0.807727
Target:  5'- gGCGacaucGUCGGCUUCgGCGcGGUGgGCGCCc -3'
miRNA:   3'- gCGCc----UAGCCGGAG-UGC-CCGC-UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 68888 0.68 0.66486
Target:  5'- uGCaGA-CGGCCgaggugaagCugGaGGUGACGCCg -3'
miRNA:   3'- gCGcCUaGCCGGa--------GugC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 71936 0.66 0.807727
Target:  5'- uGaCGG--UGGCCUgGuCGgaGGCGACGCCg -3'
miRNA:   3'- gC-GCCuaGCCGGAgU-GC--CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 75887 0.66 0.807727
Target:  5'- gCGCaGGAgggccugguacUCGGCCUCGuuaucgggucCGaaGGCGACGaCCu -3'
miRNA:   3'- -GCG-CCU-----------AGCCGGAGU----------GC--CCGCUGC-GG- -5'
15704 5' -61.7 NC_004065.1 + 76750 0.67 0.756673
Target:  5'- gCGCGGcgccggCGGCCUCGucauCGuccGGCGcauCGCCg -3'
miRNA:   3'- -GCGCCua----GCCGGAGU----GC---CCGCu--GCGG- -5'
15704 5' -61.7 NC_004065.1 + 77045 0.67 0.756673
Target:  5'- gCGCGGAUCGGCgacgagaaCACGGccgagauccGCGAgcugUGCCu -3'
miRNA:   3'- -GCGCCUAGCCGga------GUGCC---------CGCU----GCGG- -5'
15704 5' -61.7 NC_004065.1 + 78294 0.68 0.663919
Target:  5'- aGCGGcUCucgagGGCCUCGgacugcgUGGGCGAC-CCg -3'
miRNA:   3'- gCGCCuAG-----CCGGAGU-------GCCCGCUGcGG- -5'
15704 5' -61.7 NC_004065.1 + 78635 0.69 0.627109
Target:  5'- aCGCGG-UCGGCga---GGGCGACGUg -3'
miRNA:   3'- -GCGCCuAGCCGgagugCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 78651 0.67 0.765458
Target:  5'- --aGaGAUCGGCCgccagcgcaGCGGcCGGCGCCg -3'
miRNA:   3'- gcgC-CUAGCCGGag-------UGCCcGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 79244 0.67 0.756673
Target:  5'- aGCGGAUCacGCUg-ACGGcGCGAUGUCu -3'
miRNA:   3'- gCGCCUAGc-CGGagUGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 82663 0.67 0.765459
Target:  5'- aGCGGGUCucgugccuccuGGCCgagaggcgcagCAUGuGCGugGCCa -3'
miRNA:   3'- gCGCCUAG-----------CCGGa----------GUGCcCGCugCGG- -5'
15704 5' -61.7 NC_004065.1 + 82758 0.67 0.747795
Target:  5'- gCGCaGAagaCGGCCUCggagagcagGCGuccGGUGGCGCCg -3'
miRNA:   3'- -GCGcCUa--GCCGGAG---------UGC---CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 83960 0.66 0.806912
Target:  5'- uGCGGuagCGGCaCUCGuccucggcauccuCGGucGUGGCGCCu -3'
miRNA:   3'- gCGCCua-GCCG-GAGU-------------GCC--CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 86900 0.73 0.397033
Target:  5'- uCGCGGcgcCGGUCUCGCccucGGCGGCGCg -3'
miRNA:   3'- -GCGCCua-GCCGGAGUGc---CCGCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.