miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 88461 0.68 0.711487
Target:  5'- gGCGucgcaGGUCUUGCGcGCGACGCCg -3'
miRNA:   3'- gCGCcuag-CCGGAGUGCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 88694 0.66 0.815801
Target:  5'- cCGUGaGGUaguaGGCgCUCuuGGGCaGCGCCc -3'
miRNA:   3'- -GCGC-CUAg---CCG-GAGugCCCGcUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 88818 0.67 0.756673
Target:  5'- aCGCGGAUCuGCCUguCGu-CGGCGCg -3'
miRNA:   3'- -GCGCCUAGcCGGAguGCccGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 88968 0.7 0.552124
Target:  5'- gCGCGuGAUggUGGCCacCugGGGCgccuuGACGCCg -3'
miRNA:   3'- -GCGC-CUA--GCCGGa-GugCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 91188 0.73 0.420166
Target:  5'- cCGCGGAagcgccgUCGGCgUgCGCGGcauCGGCGCCg -3'
miRNA:   3'- -GCGCCU-------AGCCGgA-GUGCCc--GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 91439 0.66 0.782718
Target:  5'- aGCGGAcugaaGGCCUgGaCGccgaaGCGGCGCCu -3'
miRNA:   3'- gCGCCUag---CCGGAgU-GCc----CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 93484 0.67 0.720668
Target:  5'- uGaCGGuggCGGCCUCuuCGGGCG-UGaCCa -3'
miRNA:   3'- gC-GCCua-GCCGGAGu-GCCCGCuGC-GG- -5'
15704 5' -61.7 NC_004065.1 + 95781 0.66 0.791179
Target:  5'- uGCGGcUCGGUg--ACGGGUuccagGGCGCCa -3'
miRNA:   3'- gCGCCuAGCCGgagUGCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 96278 0.71 0.524634
Target:  5'- gGCGGggCGGCC--AgGGGCgucacgGACGCCg -3'
miRNA:   3'- gCGCCuaGCCGGagUgCCCG------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 96573 0.67 0.756673
Target:  5'- cCGCcGA-CGaGCCgcgaCGCGuGGCGACGCUg -3'
miRNA:   3'- -GCGcCUaGC-CGGa---GUGC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 96643 0.66 0.810973
Target:  5'- gGCGGucgcgagcucuuucUCGGCgUCgGCGGGCu-CGCCc -3'
miRNA:   3'- gCGCCu-------------AGCCGgAG-UGCCCGcuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 98557 0.69 0.623329
Target:  5'- uCGCGGcAUCGuCCUCgucguauccggcgaACGGGCccagccgucucuuGACGCCg -3'
miRNA:   3'- -GCGCC-UAGCcGGAG--------------UGCCCG-------------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 98853 0.7 0.593163
Target:  5'- aGgGGGUCGGUcauauccagacgccgCUCuACGGGCGGCagguagGCCg -3'
miRNA:   3'- gCgCCUAGCCG---------------GAG-UGCCCGCUG------CGG- -5'
15704 5' -61.7 NC_004065.1 + 100777 0.72 0.45422
Target:  5'- gGCGGGcUCaGCUUCGCGcGGUGACGUg -3'
miRNA:   3'- gCGCCU-AGcCGGAGUGC-CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 101421 0.67 0.756673
Target:  5'- cCGUGGGggCGGCUggCGCGuGCGgauGCGCCu -3'
miRNA:   3'- -GCGCCUa-GCCGGa-GUGCcCGC---UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 101582 0.68 0.66486
Target:  5'- cCGCGGAc--GCCUCcgccGCGcucagacucgguGGCGGCGCCg -3'
miRNA:   3'- -GCGCCUagcCGGAG----UGC------------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 101848 0.71 0.524634
Target:  5'- uCGCGGG--GGCgUCGgGGGCGcuauCGCCg -3'
miRNA:   3'- -GCGCCUagCCGgAGUgCCCGCu---GCGG- -5'
15704 5' -61.7 NC_004065.1 + 101925 0.7 0.570691
Target:  5'- gGCGGAgaagaCGGUCUCgaagaagucGCGGGUGACcGCa -3'
miRNA:   3'- gCGCCUa----GCCGGAG---------UGCCCGCUG-CGg -5'
15704 5' -61.7 NC_004065.1 + 103525 0.71 0.488834
Target:  5'- gCGCGGcgCauGGCgaCGCGGGUGcagcGCGCCa -3'
miRNA:   3'- -GCGCCuaG--CCGgaGUGCCCGC----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 103711 0.67 0.747795
Target:  5'- gGCGGGgaGcGCCUgGCGGGCGugauCGUg -3'
miRNA:   3'- gCGCCUagC-CGGAgUGCCCGCu---GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.