miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 226591 0.7 0.598806
Target:  5'- aCGCGGAUCcgaugacgGGaCCUUAguCGGGUuGAUGCCu -3'
miRNA:   3'- -GCGCCUAG--------CC-GGAGU--GCCCG-CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 225145 0.67 0.738829
Target:  5'- aCGCGGA-CGcuCCUCcUGGGUGACcgaGCCg -3'
miRNA:   3'- -GCGCCUaGCc-GGAGuGCCCGCUG---CGG- -5'
15704 5' -61.7 NC_004065.1 + 224797 0.66 0.799517
Target:  5'- aGCGGG-CGGCagCACGGucaCGACcGCCg -3'
miRNA:   3'- gCGCCUaGCCGgaGUGCCc--GCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 224528 0.69 0.617663
Target:  5'- gCGCuGGAUCGuGCU--GCGGGCGAgacguggauguCGCCc -3'
miRNA:   3'- -GCG-CCUAGC-CGGagUGCCCGCU-----------GCGG- -5'
15704 5' -61.7 NC_004065.1 + 219839 0.68 0.702248
Target:  5'- gGUGGuaucggUGGCCUguCGGGUGACGg- -3'
miRNA:   3'- gCGCCua----GCCGGAguGCCCGCUGCgg -5'
15704 5' -61.7 NC_004065.1 + 211833 0.67 0.720668
Target:  5'- cCGCGGAcaaGGCUaucgCACGGGagucccggcCGGCGCUc -3'
miRNA:   3'- -GCGCCUag-CCGGa---GUGCCC---------GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 204533 0.68 0.66486
Target:  5'- uCGUGG-UCGccagacGCCUCGuCGGGCGGCGg- -3'
miRNA:   3'- -GCGCCuAGC------CGGAGU-GCCCGCUGCgg -5'
15704 5' -61.7 NC_004065.1 + 204299 0.67 0.746902
Target:  5'- aCGUcu-UCGGCCguuucuacuguuaUCGCGGGCccccggacGACGCCa -3'
miRNA:   3'- -GCGccuAGCCGG-------------AGUGCCCG--------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 203965 0.72 0.445775
Target:  5'- aCGgGGAaaaUCGG-CUCGCGGuuCGACGCCg -3'
miRNA:   3'- -GCgCCU---AGCCgGAGUGCCc-GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 203129 0.66 0.799518
Target:  5'- uGCGGucgagCGGCCUCugGaccGGcCGGCGgUg -3'
miRNA:   3'- gCGCCua---GCCGGAGugC---CC-GCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 202181 0.66 0.818991
Target:  5'- cCGCGGugauguucaggCGGCCgagcacccgcaggCACaucggagggcuGGGCGACGUCu -3'
miRNA:   3'- -GCGCCua---------GCCGGa------------GUG-----------CCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 201799 0.66 0.774142
Target:  5'- aGgGGGUUGGUCUCcugcuugcCGGGCGucCGCa -3'
miRNA:   3'- gCgCCUAGCCGGAGu-------GCCCGCu-GCGg -5'
15704 5' -61.7 NC_004065.1 + 201698 0.74 0.373982
Target:  5'- aCGCGGAcaGGCCcuguccgucuUCACgGGGCGACGUg -3'
miRNA:   3'- -GCGCCUagCCGG----------AGUG-CCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 201634 0.67 0.756673
Target:  5'- cCGUGGAacacccCGGUgUCcCGGuaGACGCCg -3'
miRNA:   3'- -GCGCCUa-----GCCGgAGuGCCcgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 201190 0.68 0.66486
Target:  5'- aGCGGcgCGuCCcggCuCGGGCGGCGCg -3'
miRNA:   3'- gCGCCuaGCcGGa--GuGCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 200849 0.71 0.533743
Target:  5'- gGUGGAguUCGGCgUCgACGGG-GGCGCg -3'
miRNA:   3'- gCGCCU--AGCCGgAG-UGCCCgCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 200786 0.66 0.791179
Target:  5'- gCGCGG--CGGUg--GCGGGCGACGgCg -3'
miRNA:   3'- -GCGCCuaGCCGgagUGCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 198330 0.66 0.797029
Target:  5'- cCGCGGAaCGGCCagaucccccucagcUCGCcgGGGUccuuCGCCa -3'
miRNA:   3'- -GCGCCUaGCCGG--------------AGUG--CCCGcu--GCGG- -5'
15704 5' -61.7 NC_004065.1 + 198010 0.67 0.720668
Target:  5'- uGCGcGAU-GGCCUCggagGCGGucGCGGuCGCCg -3'
miRNA:   3'- gCGC-CUAgCCGGAG----UGCC--CGCU-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 197283 0.7 0.552124
Target:  5'- gCGCauGGG-CGGCUUCuCGcGCGACGCCg -3'
miRNA:   3'- -GCG--CCUaGCCGGAGuGCcCGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.