miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 196824 0.67 0.729784
Target:  5'- uCGUGGucaccugCGGCaggUGCGGGCGACGgUa -3'
miRNA:   3'- -GCGCCua-----GCCGga-GUGCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 195782 0.68 0.711486
Target:  5'- aCGCaGGUCGcGUCUC-UGGGCGcCGCg -3'
miRNA:   3'- -GCGcCUAGC-CGGAGuGCCCGCuGCGg -5'
15704 5' -61.7 NC_004065.1 + 195435 0.66 0.799518
Target:  5'- uCGCcaGGAaCGGCgUCGCGGaGCGcacggucuGCGUCg -3'
miRNA:   3'- -GCG--CCUaGCCGgAGUGCC-CGC--------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 194535 0.66 0.815801
Target:  5'- aCGCcGGUCGuGCCcgugaacgucgUCACGGGCaccGCGCa -3'
miRNA:   3'- -GCGcCUAGC-CGG-----------AGUGCCCGc--UGCGg -5'
15704 5' -61.7 NC_004065.1 + 194443 0.66 0.791179
Target:  5'- gGCGccUCGGUCgaaGCGguugggcacGGCGGCGCCg -3'
miRNA:   3'- gCGCcuAGCCGGag-UGC---------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 191268 0.74 0.351855
Target:  5'- uGUGGAaaCGGUaCUCGCGGGC-ACGCCg -3'
miRNA:   3'- gCGCCUa-GCCG-GAGUGCCCGcUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 191229 0.71 0.515585
Target:  5'- gGCGGAUgGGgCUCuGCGGGCGccagacCGUCa -3'
miRNA:   3'- gCGCCUAgCCgGAG-UGCCCGCu-----GCGG- -5'
15704 5' -61.7 NC_004065.1 + 187403 0.68 0.692959
Target:  5'- gCGCGGugUGGCgUCGaGGGCGAgCGCa -3'
miRNA:   3'- -GCGCCuaGCCGgAGUgCCCGCU-GCGg -5'
15704 5' -61.7 NC_004065.1 + 187033 0.67 0.747795
Target:  5'- gGCGGcgCGGCgUC-UGaGGUGAUGCg -3'
miRNA:   3'- gCGCCuaGCCGgAGuGC-CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 186920 0.74 0.359126
Target:  5'- gCGCGGAUCGGCg-C-CGGGUcgcgGAUGCCc -3'
miRNA:   3'- -GCGCCUAGCCGgaGuGCCCG----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 186508 0.65 0.821369
Target:  5'- gCGCGGAccgggUCGGaUCUCcgucucuccaagugAUGuaucGGCGGCGCCg -3'
miRNA:   3'- -GCGCCU-----AGCC-GGAG--------------UGC----CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 184841 0.69 0.65261
Target:  5'- uGCuGGGuUCGGCCgagggaucgagucgaGCGGGCggcggGACGCCg -3'
miRNA:   3'- gCG-CCU-AGCCGGag-------------UGCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 182716 1.11 0.001178
Target:  5'- cCGCGGAUCGGCCUCACGGGCGACGCCg -3'
miRNA:   3'- -GCGCCUAGCCGGAGUGCCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 179744 0.69 0.617663
Target:  5'- gCGCGGAcggCGGUCUCG-GGGCccgaaucgGGCGUCu -3'
miRNA:   3'- -GCGCCUa--GCCGGAGUgCCCG--------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 179674 0.67 0.747795
Target:  5'- aGCGGGggGGCUcgggaUCGCGGcG-GugGCCa -3'
miRNA:   3'- gCGCCUagCCGG-----AGUGCC-CgCugCGG- -5'
15704 5' -61.7 NC_004065.1 + 177922 0.66 0.815801
Target:  5'- aGCGGucuacGUCGGUCUUc--GGCGcCGCCg -3'
miRNA:   3'- gCGCC-----UAGCCGGAGugcCCGCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 176163 0.67 0.747795
Target:  5'- -aCGGAgUGGCCaUCcCGGcGCGACcGCCg -3'
miRNA:   3'- gcGCCUaGCCGG-AGuGCC-CGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 174140 0.74 0.366502
Target:  5'- uGCGGcAUCGGCCUggaCGCcGGauCGACGCCg -3'
miRNA:   3'- gCGCC-UAGCCGGA---GUGcCC--GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 169631 0.67 0.747794
Target:  5'- uCGuCGGAacCGGCCUCACcacgaucGGUGGCGUg -3'
miRNA:   3'- -GC-GCCUa-GCCGGAGUGc------CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 169587 0.71 0.506598
Target:  5'- uCGCGGcucCGGCCgguUCGCGGGgGcCGUCa -3'
miRNA:   3'- -GCGCCua-GCCGG---AGUGCCCgCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.