miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 168835 0.68 0.711487
Target:  5'- cCGCGGGUCcuGGCCUaCGcCGGGUucGGCGguuCCa -3'
miRNA:   3'- -GCGCCUAG--CCGGA-GU-GCCCG--CUGC---GG- -5'
15704 5' -61.7 NC_004065.1 + 168606 0.7 0.583779
Target:  5'- uGCGGAggcagaagCGGCUgcuggcgcuggugcCGCGGGCGGaGCCg -3'
miRNA:   3'- gCGCCUa-------GCCGGa-------------GUGCCCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 168585 0.7 0.589406
Target:  5'- aGCGGGUCgGGCCggccCugGGuaGGgGCCu -3'
miRNA:   3'- gCGCCUAG-CCGGa---GugCCcgCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 168175 0.69 0.655439
Target:  5'- gCGCGGggCGcGaca-GCGGcGCGACGCCu -3'
miRNA:   3'- -GCGCCuaGC-CggagUGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 167414 0.66 0.791179
Target:  5'- cCGCGGcugCuGCCgccggCGgGGGCGGCGgCg -3'
miRNA:   3'- -GCGCCua-GcCGGa----GUgCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 166502 0.71 0.506599
Target:  5'- uCGCGGcgaucuaCGGCCgcgaGGGCGAgGCCa -3'
miRNA:   3'- -GCGCCua-----GCCGGagugCCCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 165854 0.67 0.729784
Target:  5'- gGCGGGgccggaCGGUcuCUCACGgucccgaaGGCGAgGCCg -3'
miRNA:   3'- gCGCCUa-----GCCG--GAGUGC--------CCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 165395 0.68 0.678009
Target:  5'- gCGCGGucgaUGGCCuucuggaaguccgucUCuaggGCGGGCGuCGCCg -3'
miRNA:   3'- -GCGCCua--GCCGG---------------AG----UGCCCGCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 164457 0.67 0.728876
Target:  5'- uCGCGGuacaGGUaCUCGCGacccgccGGCGACGCg -3'
miRNA:   3'- -GCGCCuag-CCG-GAGUGC-------CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 159972 0.66 0.782718
Target:  5'- uCGCGGcgaucgUGGCCgUCuccaccgugACGaGCGACGCCa -3'
miRNA:   3'- -GCGCCua----GCCGG-AG---------UGCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 157938 0.68 0.711487
Target:  5'- gGC-GAUCaGGCCgCGCaGGGUGGCGUCc -3'
miRNA:   3'- gCGcCUAG-CCGGaGUG-CCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 155878 0.66 0.807727
Target:  5'- uGCGGGguucUCGGCC---CGGGCaccCGCCu -3'
miRNA:   3'- gCGCCU----AGCCGGaguGCCCGcu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 153636 0.68 0.692959
Target:  5'- -uCGGAcggCGGCgagCUCAucCGcGGCGGCGCCg -3'
miRNA:   3'- gcGCCUa--GCCG---GAGU--GC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 153612 0.79 0.181819
Target:  5'- -uCGGGUCGGCU---CGGGCGGCGCCa -3'
miRNA:   3'- gcGCCUAGCCGGaguGCCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 153327 0.66 0.782718
Target:  5'- gGCGGAUCcuggagaagGGCCUCccCaGGCugaucgucaggGACGCCu -3'
miRNA:   3'- gCGCCUAG---------CCGGAGu-GcCCG-----------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 152889 0.67 0.756673
Target:  5'- uGCGGGUCGcGCC--GCaGGCaGAUGCUg -3'
miRNA:   3'- gCGCCUAGC-CGGagUGcCCG-CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 151411 0.67 0.765459
Target:  5'- gGCGGGUCGGUCg---GGGUGGuCGaCCu -3'
miRNA:   3'- gCGCCUAGCCGGagugCCCGCU-GC-GG- -5'
15704 5' -61.7 NC_004065.1 + 150425 0.68 0.683626
Target:  5'- aGCGGGUcCGGCCUguccaACaGGUGACacucgGCCa -3'
miRNA:   3'- gCGCCUA-GCCGGAg----UGcCCGCUG-----CGG- -5'
15704 5' -61.7 NC_004065.1 + 150351 0.66 0.791179
Target:  5'- uGCGGAugucgggcacguUCGGCacCUCcCGGGUcaucaGCGCCg -3'
miRNA:   3'- gCGCCU------------AGCCG--GAGuGCCCGc----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 149927 0.67 0.764584
Target:  5'- gCGCGGcUCGGCaggagGCGGGCuugauccacagacGGCGUCa -3'
miRNA:   3'- -GCGCCuAGCCGgag--UGCCCG-------------CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.