miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 98557 0.69 0.623329
Target:  5'- uCGCGGcAUCGuCCUCgucguauccggcgaACGGGCccagccgucucuuGACGCCg -3'
miRNA:   3'- -GCGCC-UAGCcGGAG--------------UGCCCG-------------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 101848 0.71 0.524634
Target:  5'- uCGCGGG--GGCgUCGgGGGCGcuauCGCCg -3'
miRNA:   3'- -GCGCCUagCCGgAGUgCCCGCu---GCGG- -5'
15704 5' -61.7 NC_004065.1 + 135605 0.71 0.524634
Target:  5'- cCGCugGGAgaCGGCCgucaCGCGGGUcuacGGCGCCa -3'
miRNA:   3'- -GCG--CCUa-GCCGGa---GUGCCCG----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 200849 0.71 0.533743
Target:  5'- gGUGGAguUCGGCgUCgACGGG-GGCGCg -3'
miRNA:   3'- gCGCCU--AGCCGgAG-UGCCCgCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 88968 0.7 0.552124
Target:  5'- gCGCGuGAUggUGGCCacCugGGGCgccuuGACGCCg -3'
miRNA:   3'- -GCGC-CUA--GCCGGa-GugCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 168606 0.7 0.583779
Target:  5'- uGCGGAggcagaagCGGCUgcuggcgcuggugcCGCGGGCGGaGCCg -3'
miRNA:   3'- gCGCCUa-------GCCGGa-------------GUGCCCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 18587 0.7 0.598806
Target:  5'- aGCGGAggGGCCUCGuuGGUGuuguCGUCa -3'
miRNA:   3'- gCGCCUagCCGGAGUgcCCGCu---GCGG- -5'
15704 5' -61.7 NC_004065.1 + 224528 0.69 0.617663
Target:  5'- gCGCuGGAUCGuGCU--GCGGGCGAgacguggauguCGCCc -3'
miRNA:   3'- -GCG-CCUAGC-CGGagUGCCCGCU-----------GCGG- -5'
15704 5' -61.7 NC_004065.1 + 149016 0.69 0.62144
Target:  5'- uGCGGcgAUCGGaaCCUCgggcugaccucgggaGCGGGCGACGaCg -3'
miRNA:   3'- gCGCC--UAGCC--GGAG---------------UGCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 96278 0.71 0.524634
Target:  5'- gGCGGggCGGCC--AgGGGCgucacgGACGCCg -3'
miRNA:   3'- gCGCCuaGCCGGagUgCCCG------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 169587 0.71 0.506598
Target:  5'- uCGCGGcucCGGCCgguUCGCGGGgGcCGUCa -3'
miRNA:   3'- -GCGCCua-GCCGG---AGUGCCCgCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 24760 0.71 0.506598
Target:  5'- gGCGGccccccGUUGGCCggCGCGGGUaucucGCGCCa -3'
miRNA:   3'- gCGCC------UAGCCGGa-GUGCCCGc----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 133891 0.73 0.4129
Target:  5'- gGCGGAacgaCGGgccacCCUCGCGGaGCGACcGCCu -3'
miRNA:   3'- gCGCCUa---GCC-----GGAGUGCC-CGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 91188 0.73 0.420166
Target:  5'- cCGCGGAagcgccgUCGGCgUgCGCGGcauCGGCGCCg -3'
miRNA:   3'- -GCGCCU-------AGCCGgA-GUGCCc--GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 138304 0.73 0.429152
Target:  5'- cCGUGGAcgCGGCCcugaUCGCGuGCGAgGCCu -3'
miRNA:   3'- -GCGCCUa-GCCGG----AGUGCcCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 118169 0.72 0.437418
Target:  5'- cCGCGGcggCGGCCgUCACGGcUGcCGCCg -3'
miRNA:   3'- -GCGCCua-GCCGG-AGUGCCcGCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 100777 0.72 0.45422
Target:  5'- gGCGGGcUCaGCUUCGCGcGGUGACGUg -3'
miRNA:   3'- gCGCCU-AGcCGGAGUGC-CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 120557 0.72 0.471365
Target:  5'- gGCGGcgGUCGGCgcgaGCGGGCGggaccuccgGCGCCg -3'
miRNA:   3'- gCGCC--UAGCCGgag-UGCCCGC---------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 58628 0.72 0.48006
Target:  5'- gGCGGAgucgcCGGUCUCGCGGaUGAUGUCc -3'
miRNA:   3'- gCGCCUa----GCCGGAGUGCCcGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 142764 0.71 0.49768
Target:  5'- cCGCGacgacGA-CGGCCUgCugGuGGUGGCGCCg -3'
miRNA:   3'- -GCGC-----CUaGCCGGA-GugC-CCGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.