Results 41 - 60 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15704 | 5' | -61.7 | NC_004065.1 | + | 100777 | 0.72 | 0.45422 |
Target: 5'- gGCGGGcUCaGCUUCGCGcGGUGACGUg -3' miRNA: 3'- gCGCCU-AGcCGGAGUGC-CCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 118169 | 0.72 | 0.437418 |
Target: 5'- cCGCGGcggCGGCCgUCACGGcUGcCGCCg -3' miRNA: 3'- -GCGCCua-GCCGG-AGUGCCcGCuGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 138304 | 0.73 | 0.429152 |
Target: 5'- cCGUGGAcgCGGCCcugaUCGCGuGCGAgGCCu -3' miRNA: 3'- -GCGCCUa-GCCGG----AGUGCcCGCUgCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 91188 | 0.73 | 0.420166 |
Target: 5'- cCGCGGAagcgccgUCGGCgUgCGCGGcauCGGCGCCg -3' miRNA: 3'- -GCGCCU-------AGCCGgA-GUGCCc--GCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 133891 | 0.73 | 0.4129 |
Target: 5'- gGCGGAacgaCGGgccacCCUCGCGGaGCGACcGCCu -3' miRNA: 3'- gCGCCUa---GCC-----GGAGUGCC-CGCUG-CGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 200849 | 0.71 | 0.533743 |
Target: 5'- gGUGGAguUCGGCgUCgACGGG-GGCGCg -3' miRNA: 3'- gCGCCU--AGCCGgAG-UGCCCgCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 88968 | 0.7 | 0.552124 |
Target: 5'- gCGCGuGAUggUGGCCacCugGGGCgccuuGACGCCg -3' miRNA: 3'- -GCGC-CUA--GCCGGa-GugCCCG-----CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 201190 | 0.68 | 0.66486 |
Target: 5'- aGCGGcgCGuCCcggCuCGGGCGGCGCg -3' miRNA: 3'- gCGCCuaGCcGGa--GuGCCCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 17430 | 0.68 | 0.663918 |
Target: 5'- aGCGGucguuuggCGGCCUCuCuGGCGACacgugaaGCCa -3' miRNA: 3'- gCGCCua------GCCGGAGuGcCCGCUG-------CGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 184841 | 0.69 | 0.65261 |
Target: 5'- uGCuGGGuUCGGCCgagggaucgagucgaGCGGGCggcggGACGCCg -3' miRNA: 3'- gCG-CCU-AGCCGGag-------------UGCCCG-----CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 109203 | 0.69 | 0.645058 |
Target: 5'- gGCGGcgccUCGGCCUCuuccugcucggcgACGGGaGACGgCg -3' miRNA: 3'- gCGCCu---AGCCGGAG-------------UGCCCgCUGCgG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 45825 | 0.69 | 0.640336 |
Target: 5'- uGCGGGUgggcauguaucggacCGGCCgCACGGgacGCGAUgGCCg -3' miRNA: 3'- gCGCCUA---------------GCCGGaGUGCC---CGCUG-CGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 19350 | 0.69 | 0.636557 |
Target: 5'- uCGCGGA--GGUCUCuCGGGaGGCGUCu -3' miRNA: 3'- -GCGCCUagCCGGAGuGCCCgCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 55402 | 0.69 | 0.635612 |
Target: 5'- aGCGGAcagaagacCGGCCUgAUGGGCuguccggGGCGCg -3' miRNA: 3'- gCGCCUa-------GCCGGAgUGCCCG-------CUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 109845 | 0.69 | 0.627108 |
Target: 5'- gGCGGGg-GGCCaUCGCgcaggugccGGGCGGUGCCa -3' miRNA: 3'- gCGCCUagCCGG-AGUG---------CCCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 98557 | 0.69 | 0.623329 |
Target: 5'- uCGCGGcAUCGuCCUCgucguauccggcgaACGGGCccagccgucucuuGACGCCg -3' miRNA: 3'- -GCGCC-UAGCcGGAG--------------UGCCCG-------------CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 149016 | 0.69 | 0.62144 |
Target: 5'- uGCGGcgAUCGGaaCCUCgggcugaccucgggaGCGGGCGACGaCg -3' miRNA: 3'- gCGCC--UAGCC--GGAG---------------UGCCCGCUGCgG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 224528 | 0.69 | 0.617663 |
Target: 5'- gCGCuGGAUCGuGCU--GCGGGCGAgacguggauguCGCCc -3' miRNA: 3'- -GCG-CCUAGC-CGGagUGCCCGCU-----------GCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 18587 | 0.7 | 0.598806 |
Target: 5'- aGCGGAggGGCCUCGuuGGUGuuguCGUCa -3' miRNA: 3'- gCGCCUagCCGGAGUgcCCGCu---GCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 168606 | 0.7 | 0.583779 |
Target: 5'- uGCGGAggcagaagCGGCUgcuggcgcuggugcCGCGGGCGGaGCCg -3' miRNA: 3'- gCGCCUa-------GCCGGa-------------GUGCCCGCUgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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