miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 149016 0.69 0.62144
Target:  5'- uGCGGcgAUCGGaaCCUCgggcugaccucgggaGCGGGCGACGaCg -3'
miRNA:   3'- gCGCC--UAGCC--GGAG---------------UGCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 98557 0.69 0.623329
Target:  5'- uCGCGGcAUCGuCCUCgucguauccggcgaACGGGCccagccgucucuuGACGCCg -3'
miRNA:   3'- -GCGCC-UAGCcGGAG--------------UGCCCG-------------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 23624 0.68 0.66486
Target:  5'- gGCGGGUggacgggcggcUGGCCU--CGGGCcGACGCa -3'
miRNA:   3'- gCGCCUA-----------GCCGGAguGCCCG-CUGCGg -5'
15704 5' -61.7 NC_004065.1 + 141552 0.68 0.674257
Target:  5'- aCGCGcucuUCGGCgUCGCGcGcaagaccuGCGACGCCc -3'
miRNA:   3'- -GCGCcu--AGCCGgAGUGC-C--------CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 150425 0.68 0.683626
Target:  5'- aGCGGGUcCGGCCUguccaACaGGUGACacucgGCCa -3'
miRNA:   3'- gCGCCUA-GCCGGAg----UGcCCGCUG-----CGG- -5'
15704 5' -61.7 NC_004065.1 + 128402 0.68 0.702248
Target:  5'- uGUGGGggccgagCGGCa--GCGgcGGCGGCGCCg -3'
miRNA:   3'- gCGCCUa------GCCGgagUGC--CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 63510 0.68 0.711486
Target:  5'- uGCGGAU-GGCCUCGCccucgcGGCcguaGAuCGCCg -3'
miRNA:   3'- gCGCCUAgCCGGAGUGc-----CCG----CU-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 143629 0.68 0.711486
Target:  5'- cCGCGGAcucccugaaGGauuCCUCG-GGGCGACGCg -3'
miRNA:   3'- -GCGCCUag-------CC---GGAGUgCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 195782 0.68 0.711486
Target:  5'- aCGCaGGUCGcGUCUC-UGGGCGcCGCg -3'
miRNA:   3'- -GCGcCUAGC-CGGAGuGCCCGCuGCGg -5'
15704 5' -61.7 NC_004065.1 + 55879 0.67 0.720668
Target:  5'- gGCGucGAUCGGCgUC-CaGGCcGAUGCCg -3'
miRNA:   3'- gCGC--CUAGCCGgAGuGcCCG-CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 126255 0.68 0.66486
Target:  5'- gGCGGAUCGaGCCgcccagCGCGuucaGCaGCGCCu -3'
miRNA:   3'- gCGCCUAGC-CGGa-----GUGCc---CGcUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 68888 0.68 0.66486
Target:  5'- uGCaGA-CGGCCgaggugaagCugGaGGUGACGCCg -3'
miRNA:   3'- gCGcCUaGCCGGa--------GugC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 109845 0.69 0.627108
Target:  5'- gGCGGGg-GGCCaUCGCgcaggugccGGGCGGUGCCa -3'
miRNA:   3'- gCGCCUagCCGG-AGUG---------CCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 55402 0.69 0.635612
Target:  5'- aGCGGAcagaagacCGGCCUgAUGGGCuguccggGGCGCg -3'
miRNA:   3'- gCGCCUa-------GCCGGAgUGCCCG-------CUGCGg -5'
15704 5' -61.7 NC_004065.1 + 19350 0.69 0.636557
Target:  5'- uCGCGGA--GGUCUCuCGGGaGGCGUCu -3'
miRNA:   3'- -GCGCCUagCCGGAGuGCCCgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 45825 0.69 0.640336
Target:  5'- uGCGGGUgggcauguaucggacCGGCCgCACGGgacGCGAUgGCCg -3'
miRNA:   3'- gCGCCUA---------------GCCGGaGUGCC---CGCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 109203 0.69 0.645058
Target:  5'- gGCGGcgccUCGGCCUCuuccugcucggcgACGGGaGACGgCg -3'
miRNA:   3'- gCGCCu---AGCCGGAG-------------UGCCCgCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 184841 0.69 0.65261
Target:  5'- uGCuGGGuUCGGCCgagggaucgagucgaGCGGGCggcggGACGCCg -3'
miRNA:   3'- gCG-CCU-AGCCGGag-------------UGCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 17430 0.68 0.663918
Target:  5'- aGCGGucguuuggCGGCCUCuCuGGCGACacgugaaGCCa -3'
miRNA:   3'- gCGCCua------GCCGGAGuGcCCGCUG-------CGG- -5'
15704 5' -61.7 NC_004065.1 + 201190 0.68 0.66486
Target:  5'- aGCGGcgCGuCCcggCuCGGGCGGCGCg -3'
miRNA:   3'- gCGCCuaGCcGGa--GuGCCCGCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.