Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15704 | 5' | -61.7 | NC_004065.1 | + | 182716 | 1.11 | 0.001178 |
Target: 5'- cCGCGGAUCGGCCUCACGGGCGACGCCg -3' miRNA: 3'- -GCGCCUAGCCGGAGUGCCCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 106342 | 0.7 | 0.552124 |
Target: 5'- gGCGGccCGGCgCUgcugCACGGGCagcGCGCCa -3' miRNA: 3'- gCGCCuaGCCG-GA----GUGCCCGc--UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 101925 | 0.7 | 0.570691 |
Target: 5'- gGCGGAgaagaCGGUCUCgaagaagucGCGGGUGACcGCa -3' miRNA: 3'- gCGCCUa----GCCGGAG---------UGCCCGCUG-CGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 186508 | 0.65 | 0.821369 |
Target: 5'- gCGCGGAccgggUCGGaUCUCcgucucuccaagugAUGuaucGGCGGCGCCg -3' miRNA: 3'- -GCGCCU-----AGCC-GGAG--------------UGC----CCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 191268 | 0.74 | 0.351855 |
Target: 5'- uGUGGAaaCGGUaCUCGCGGGC-ACGCCg -3' miRNA: 3'- gCGCCUa-GCCG-GAGUGCCCGcUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 186920 | 0.74 | 0.359126 |
Target: 5'- gCGCGGAUCGGCg-C-CGGGUcgcgGAUGCCc -3' miRNA: 3'- -GCGCCUAGCCGgaGuGCCCG----CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 201698 | 0.74 | 0.373982 |
Target: 5'- aCGCGGAcaGGCCcuguccgucuUCACgGGGCGACGUg -3' miRNA: 3'- -GCGCCUagCCGG----------AGUG-CCCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 86900 | 0.73 | 0.397033 |
Target: 5'- uCGCGGcgcCGGUCUCGCccucGGCGGCGCg -3' miRNA: 3'- -GCGCCua-GCCGGAGUGc---CCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 103525 | 0.71 | 0.488834 |
Target: 5'- gCGCGGcgCauGGCgaCGCGGGUGcagcGCGCCa -3' miRNA: 3'- -GCGCCuaG--CCGgaGUGCCCGC----UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 35189 | 0.7 | 0.552124 |
Target: 5'- cCGUGG-UCGGCCUggagaACGuGGCGGCcaccGCCa -3' miRNA: 3'- -GCGCCuAGCCGGAg----UGC-CCGCUG----CGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 191229 | 0.71 | 0.515585 |
Target: 5'- gGCGGAUgGGgCUCuGCGGGCGccagacCGUCa -3' miRNA: 3'- gCGCCUAgCCgGAG-UGCCCGCu-----GCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 59322 | 0.72 | 0.45422 |
Target: 5'- aGCGGcaAUCGcGCC--GCGGGCGGCGUg -3' miRNA: 3'- gCGCC--UAGC-CGGagUGCCCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 153612 | 0.79 | 0.181819 |
Target: 5'- -uCGGGUCGGCU---CGGGCGGCGCCa -3' miRNA: 3'- gcGCCUAGCCGGaguGCCCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 139767 | 0.71 | 0.53283 |
Target: 5'- uCGUGGucacUCuGCuCUCGCGGGCcuucgccGACGCCg -3' miRNA: 3'- -GCGCCu---AGcCG-GAGUGCCCG-------CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 65355 | 0.76 | 0.278851 |
Target: 5'- gGUGGGUCGGUCggaUCGaccUGGGCGACGCg -3' miRNA: 3'- gCGCCUAGCCGG---AGU---GCCCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 203965 | 0.72 | 0.445775 |
Target: 5'- aCGgGGAaaaUCGG-CUCGCGGuuCGACGCCg -3' miRNA: 3'- -GCgCCU---AGCCgGAGUGCCc-GCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 197283 | 0.7 | 0.552124 |
Target: 5'- gCGCauGGG-CGGCUUCuCGcGCGACGCCg -3' miRNA: 3'- -GCG--CCUaGCCGGAGuGCcCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 136748 | 0.7 | 0.561387 |
Target: 5'- --gGGcgCGGUUUCGCGGGgGAUGCg -3' miRNA: 3'- gcgCCuaGCCGGAGUGCCCgCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 139902 | 0.74 | 0.344689 |
Target: 5'- cCGCGG---GGCCUCcgGCcGGCGGCGCCa -3' miRNA: 3'- -GCGCCuagCCGGAG--UGcCCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 174140 | 0.74 | 0.366502 |
Target: 5'- uGCGGcAUCGGCCUggaCGCcGGauCGACGCCg -3' miRNA: 3'- gCGCC-UAGCCGGA---GUGcCC--GCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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