Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15704 | 5' | -61.7 | NC_004065.1 | + | 98853 | 0.7 | 0.593163 |
Target: 5'- aGgGGGUCGGUcauauccagacgccgCUCuACGGGCGGCagguagGCCg -3' miRNA: 3'- gCgCCUAGCCG---------------GAG-UGCCCGCUG------CGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 101925 | 0.7 | 0.570691 |
Target: 5'- gGCGGAgaagaCGGUCUCgaagaagucGCGGGUGACcGCa -3' miRNA: 3'- gCGCCUa----GCCGGAG---------UGCCCGCUG-CGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 59322 | 0.72 | 0.45422 |
Target: 5'- aGCGGcaAUCGcGCC--GCGGGCGGCGUg -3' miRNA: 3'- gCGCC--UAGC-CGGagUGCCCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 139902 | 0.74 | 0.344689 |
Target: 5'- cCGCGG---GGCCUCcgGCcGGCGGCGCCa -3' miRNA: 3'- -GCGCCuagCCGGAG--UGcCCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 120125 | 0.68 | 0.681755 |
Target: 5'- gGCGGA-CGaGCCgggaccccccgaCGCGgccgcGGCGACGCCg -3' miRNA: 3'- gCGCCUaGC-CGGa-----------GUGC-----CCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 129995 | 0.69 | 0.617663 |
Target: 5'- cCGCGGGggCGGCgg-ACGaGGCGAUGCUg -3' miRNA: 3'- -GCGCCUa-GCCGgagUGC-CCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 106342 | 0.7 | 0.552124 |
Target: 5'- gGCGGccCGGCgCUgcugCACGGGCagcGCGCCa -3' miRNA: 3'- gCGCCuaGCCG-GA----GUGCCCGc--UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 65355 | 0.76 | 0.278851 |
Target: 5'- gGUGGGUCGGUCggaUCGaccUGGGCGACGCg -3' miRNA: 3'- gCGCCUAGCCGG---AGU---GCCCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 179744 | 0.69 | 0.617663 |
Target: 5'- gCGCGGAcggCGGUCUCG-GGGCccgaaucgGGCGUCu -3' miRNA: 3'- -GCGCCUa--GCCGGAGUgCCCG--------CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 153612 | 0.79 | 0.181819 |
Target: 5'- -uCGGGUCGGCU---CGGGCGGCGCCa -3' miRNA: 3'- gcGCCUAGCCGGaguGCCCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 136748 | 0.7 | 0.561387 |
Target: 5'- --gGGcgCGGUUUCGCGGGgGAUGCg -3' miRNA: 3'- gcgCCuaGCCGGAGUGCCCgCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 2759 | 0.7 | 0.598806 |
Target: 5'- gGgGGGUCGGUCUCAucCGGGaCGAC-CUc -3' miRNA: 3'- gCgCCUAGCCGGAGU--GCCC-GCUGcGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 139767 | 0.71 | 0.53283 |
Target: 5'- uCGUGGucacUCuGCuCUCGCGGGCcuucgccGACGCCg -3' miRNA: 3'- -GCGCCu---AGcCG-GAGUGCCCG-------CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 103525 | 0.71 | 0.488834 |
Target: 5'- gCGCGGcgCauGGCgaCGCGGGUGcagcGCGCCa -3' miRNA: 3'- -GCGCCuaG--CCGgaGUGCCCGC----UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 201698 | 0.74 | 0.373982 |
Target: 5'- aCGCGGAcaGGCCcuguccgucuUCACgGGGCGACGUg -3' miRNA: 3'- -GCGCCUagCCGG----------AGUG-CCCGCUGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 191268 | 0.74 | 0.351855 |
Target: 5'- uGUGGAaaCGGUaCUCGCGGGC-ACGCCg -3' miRNA: 3'- gCGCCUa-GCCG-GAGUGCCCGcUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 187403 | 0.68 | 0.692959 |
Target: 5'- gCGCGGugUGGCgUCGaGGGCGAgCGCa -3' miRNA: 3'- -GCGCCuaGCCGgAGUgCCCGCU-GCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 56141 | 0.68 | 0.683627 |
Target: 5'- gGCGGcggCGGCCcacacaCACGGcGUGACGgCg -3' miRNA: 3'- gCGCCua-GCCGGa-----GUGCC-CGCUGCgG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 204533 | 0.68 | 0.66486 |
Target: 5'- uCGUGG-UCGccagacGCCUCGuCGGGCGGCGg- -3' miRNA: 3'- -GCGCCuAGC------CGGAGU-GCCCGCUGCgg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 78635 | 0.69 | 0.627109 |
Target: 5'- aCGCGG-UCGGCga---GGGCGACGUg -3' miRNA: 3'- -GCGCCuAGCCGgagugCCCGCUGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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