miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 165395 0.68 0.678009
Target:  5'- gCGCGGucgaUGGCCuucuggaaguccgucUCuaggGCGGGCGuCGCCg -3'
miRNA:   3'- -GCGCCua--GCCGG---------------AG----UGCCCGCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 106342 0.7 0.552124
Target:  5'- gGCGGccCGGCgCUgcugCACGGGCagcGCGCCa -3'
miRNA:   3'- gCGCCuaGCCG-GA----GUGCCCGc--UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 65355 0.76 0.278851
Target:  5'- gGUGGGUCGGUCggaUCGaccUGGGCGACGCg -3'
miRNA:   3'- gCGCCUAGCCGG---AGU---GCCCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 101582 0.68 0.66486
Target:  5'- cCGCGGAc--GCCUCcgccGCGcucagacucgguGGCGGCGCCg -3'
miRNA:   3'- -GCGCCUagcCGGAG----UGC------------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 153612 0.79 0.181819
Target:  5'- -uCGGGUCGGCU---CGGGCGGCGCCa -3'
miRNA:   3'- gcGCCUAGCCGGaguGCCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 103711 0.67 0.747795
Target:  5'- gGCGGGgaGcGCCUgGCGGGCGugauCGUg -3'
miRNA:   3'- gCGCCUagC-CGGAgUGCCCGCu---GCGg -5'
15704 5' -61.7 NC_004065.1 + 191268 0.74 0.351855
Target:  5'- uGUGGAaaCGGUaCUCGCGGGC-ACGCCg -3'
miRNA:   3'- gCGCCUa-GCCG-GAGUGCCCGcUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 6926 0.67 0.738829
Target:  5'- uGCGGGcaCGGCCUC---GGCGucCGCCg -3'
miRNA:   3'- gCGCCUa-GCCGGAGugcCCGCu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 29383 0.67 0.729785
Target:  5'- aCGCcGAUCucGCCUCGaGcGCGACGCCa -3'
miRNA:   3'- -GCGcCUAGc-CGGAGUgCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 168835 0.68 0.711487
Target:  5'- cCGCGGGUCcuGGCCUaCGcCGGGUucGGCGguuCCa -3'
miRNA:   3'- -GCGCCUAG--CCGGA-GU-GCCCG--CUGC---GG- -5'
15704 5' -61.7 NC_004065.1 + 219839 0.68 0.702248
Target:  5'- gGUGGuaucggUGGCCUguCGGGUGACGg- -3'
miRNA:   3'- gCGCCua----GCCGGAguGCCCGCUGCgg -5'
15704 5' -61.7 NC_004065.1 + 187403 0.68 0.692959
Target:  5'- gCGCGGugUGGCgUCGaGGGCGAgCGCa -3'
miRNA:   3'- -GCGCCuaGCCGgAGUgCCCGCU-GCGg -5'
15704 5' -61.7 NC_004065.1 + 56141 0.68 0.683627
Target:  5'- gGCGGcggCGGCCcacacaCACGGcGUGACGgCg -3'
miRNA:   3'- gCGCCua-GCCGGa-----GUGCC-CGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 168175 0.69 0.655439
Target:  5'- gCGCGGggCGcGaca-GCGGcGCGACGCCu -3'
miRNA:   3'- -GCGCCuaGC-CggagUGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 179744 0.69 0.617663
Target:  5'- gCGCGGAcggCGGUCUCG-GGGCccgaaucgGGCGUCu -3'
miRNA:   3'- -GCGCCUa--GCCGGAGUgCCCG--------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 98853 0.7 0.593163
Target:  5'- aGgGGGUCGGUcauauccagacgccgCUCuACGGGCGGCagguagGCCg -3'
miRNA:   3'- gCgCCUAGCCG---------------GAG-UGCCCGCUG------CGG- -5'
15704 5' -61.7 NC_004065.1 + 101925 0.7 0.570691
Target:  5'- gGCGGAgaagaCGGUCUCgaagaagucGCGGGUGACcGCa -3'
miRNA:   3'- gCGCCUa----GCCGGAG---------UGCCCGCUG-CGg -5'
15704 5' -61.7 NC_004065.1 + 139767 0.71 0.53283
Target:  5'- uCGUGGucacUCuGCuCUCGCGGGCcuucgccGACGCCg -3'
miRNA:   3'- -GCGCCu---AGcCG-GAGUGCCCG-------CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 103525 0.71 0.488834
Target:  5'- gCGCGGcgCauGGCgaCGCGGGUGcagcGCGCCa -3'
miRNA:   3'- -GCGCCuaG--CCGgaGUGCCCGC----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 201698 0.74 0.373982
Target:  5'- aCGCGGAcaGGCCcuguccgucuUCACgGGGCGACGUg -3'
miRNA:   3'- -GCGCCUagCCGG----------AGUG-CCCGCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.