miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15707 3' -52.4 NC_004065.1 + 132788 0.66 0.994602
Target:  5'- uGGGCUUCCU-GGCc-CAGAaCACGACg -3'
miRNA:   3'- uCUCGGAGGAgUUGaaGUCU-GUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 97651 0.66 0.994602
Target:  5'- cGAGCUgaUCUUCGACUaCcuGCGCGGCc -3'
miRNA:   3'- uCUCGG--AGGAGUUGAaGucUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 145476 0.66 0.994602
Target:  5'- --cGCC-CCgUCGACcgCGGACACGAg -3'
miRNA:   3'- ucuCGGaGG-AGUUGaaGUCUGUGCUg -5'
15707 3' -52.4 NC_004065.1 + 30325 0.66 0.994602
Target:  5'- cGAGUCUgagCAGCUUU-GACACGGCg -3'
miRNA:   3'- uCUCGGAggaGUUGAAGuCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 71214 0.66 0.994602
Target:  5'- cGAGCCUCCUgAAg-UCGGAgAUcgGGCa -3'
miRNA:   3'- uCUCGGAGGAgUUgaAGUCUgUG--CUG- -5'
15707 3' -52.4 NC_004065.1 + 58497 0.66 0.994602
Target:  5'- gAGAaCUUCCUCAGCgaggagcccUUCGuGCGCGGCg -3'
miRNA:   3'- -UCUcGGAGGAGUUG---------AAGUcUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 122879 0.66 0.993766
Target:  5'- cGGGCCUCgUCucCgucUCGGACugGGa -3'
miRNA:   3'- uCUCGGAGgAGuuGa--AGUCUGugCUg -5'
15707 3' -52.4 NC_004065.1 + 224668 0.66 0.993766
Target:  5'- --uGCCg-UUCGACUUCGGGCAgGAUa -3'
miRNA:   3'- ucuCGGagGAGUUGAAGUCUGUgCUG- -5'
15707 3' -52.4 NC_004065.1 + 177036 0.66 0.993766
Target:  5'- --cGCCUcgCCUCAAacCUUgGGGCGCGAg -3'
miRNA:   3'- ucuCGGA--GGAGUU--GAAgUCUGUGCUg -5'
15707 3' -52.4 NC_004065.1 + 65009 0.66 0.992829
Target:  5'- cGGAGCgCUCCUUGGCcgaCAGcgaGCGCGAg -3'
miRNA:   3'- -UCUCG-GAGGAGUUGaa-GUC---UGUGCUg -5'
15707 3' -52.4 NC_004065.1 + 223055 0.66 0.992829
Target:  5'- cGGGCCUCgUCGugUgc-GACAuCGACc -3'
miRNA:   3'- uCUCGGAGgAGUugAaguCUGU-GCUG- -5'
15707 3' -52.4 NC_004065.1 + 230027 0.66 0.992829
Target:  5'- -uGGCCUUCgucCGGCUgUCcGGCACGACu -3'
miRNA:   3'- ucUCGGAGGa--GUUGA-AGuCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 24876 0.66 0.990497
Target:  5'- --cGCCUCCUCAACUggCGcuuucgcaacaccGGCgGCGGCg -3'
miRNA:   3'- ucuCGGAGGAGUUGAa-GU-------------CUG-UGCUG- -5'
15707 3' -52.4 NC_004065.1 + 761 0.66 0.989331
Target:  5'- cGGGGCg-CCUCAccccGCcuuccgCGGACGCGGCg -3'
miRNA:   3'- -UCUCGgaGGAGU----UGaa----GUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 85062 0.66 0.989331
Target:  5'- cGAGCC-CUUCGAaga-GGACACGAg -3'
miRNA:   3'- uCUCGGaGGAGUUgaagUCUGUGCUg -5'
15707 3' -52.4 NC_004065.1 + 42716 0.66 0.989331
Target:  5'- cGAGCgCUCCUCcGCccCAGugaucgcaGCGCGGCg -3'
miRNA:   3'- uCUCG-GAGGAGuUGaaGUC--------UGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 97720 0.66 0.989331
Target:  5'- cGGGCCguucuucaUCCgCGACUUCGacGACACGGg -3'
miRNA:   3'- uCUCGG--------AGGaGUUGAAGU--CUGUGCUg -5'
15707 3' -52.4 NC_004065.1 + 149992 0.66 0.989331
Target:  5'- cGAGuCCUCCaguccgaucuUCGACUugcugUCGGACACGu- -3'
miRNA:   3'- uCUC-GGAGG----------AGUUGA-----AGUCUGUGCug -5'
15707 3' -52.4 NC_004065.1 + 104381 0.66 0.989331
Target:  5'- -aGGCCUUC---ACcUCAGACACGGCu -3'
miRNA:   3'- ucUCGGAGGaguUGaAGUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 51790 0.67 0.986343
Target:  5'- -aGGUCaUCUUCAuCaUCGGACGCGACg -3'
miRNA:   3'- ucUCGG-AGGAGUuGaAGUCUGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.