Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 48459 | 1.11 | 0.006894 |
Target: 5'- aAGAGCCUCCUCAACUUCAGACACGACa -3' miRNA: 3'- -UCUCGGAGGAGUUGAAGUCUGUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 71663 | 0.81 | 0.418589 |
Target: 5'- aAGGGCCUCCUCAGCagCAGcaGCGGCg -3' miRNA: 3'- -UCUCGGAGGAGUUGaaGUCugUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 22899 | 0.78 | 0.561704 |
Target: 5'- -cAGCCUCC-CAACgcggUCAGugGCGGCg -3' miRNA: 3'- ucUCGGAGGaGUUGa---AGUCugUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 185913 | 0.78 | 0.561704 |
Target: 5'- gGGAGCUUCCUCcucaGAC-UCGGugGCGACc -3' miRNA: 3'- -UCUCGGAGGAG----UUGaAGUCugUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 76713 | 0.74 | 0.760896 |
Target: 5'- aAGAGCgcgucgagguugcaCUCCUCGGCggggaCGGGCGCGGCg -3' miRNA: 3'- -UCUCG--------------GAGGAGUUGaa---GUCUGUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 118646 | 0.74 | 0.773231 |
Target: 5'- ---uCCUCCUCGGCgUCGGACgACGACg -3' miRNA: 3'- ucucGGAGGAGUUGaAGUCUG-UGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 114033 | 0.73 | 0.843668 |
Target: 5'- cGGAGCg-CCUCugucGCcUCAGAUACGACa -3' miRNA: 3'- -UCUCGgaGGAGu---UGaAGUCUGUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 107717 | 0.72 | 0.859494 |
Target: 5'- cGGAGCCuUCCUCcuGCggCAGACGCccGACc -3' miRNA: 3'- -UCUCGG-AGGAGu-UGaaGUCUGUG--CUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 114740 | 0.71 | 0.888612 |
Target: 5'- cGGAGcCCUCC-CGA-UUCGGACgACGACg -3' miRNA: 3'- -UCUC-GGAGGaGUUgAAGUCUG-UGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 120280 | 0.71 | 0.901821 |
Target: 5'- --cGCCUCCUCAgcuccaGCUUCAG-C-CGGCa -3' miRNA: 3'- ucuCGGAGGAGU------UGAAGUCuGuGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 127434 | 0.71 | 0.901821 |
Target: 5'- aGGAGCacauCUCCUCGAuCUUCAGgACGCuGAUg -3' miRNA: 3'- -UCUCG----GAGGAGUU-GAAGUC-UGUG-CUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 213688 | 0.71 | 0.91409 |
Target: 5'- cGGAGCCcgauaCCUCuaccGCUgCGGACGCGAUc -3' miRNA: 3'- -UCUCGGa----GGAGu---UGAaGUCUGUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 103735 | 0.7 | 0.919865 |
Target: 5'- --cGCCUCCuUCGGCgUCGGuucGCGCGGCg -3' miRNA: 3'- ucuCGGAGG-AGUUGaAGUC---UGUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 18526 | 0.7 | 0.930693 |
Target: 5'- cAGAGCCgaaCC-CGACgguUCGGACuCGACg -3' miRNA: 3'- -UCUCGGa--GGaGUUGa--AGUCUGuGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 72008 | 0.7 | 0.930693 |
Target: 5'- uGAGCCUgCUgGACUUCucGACGCuGAUg -3' miRNA: 3'- uCUCGGAgGAgUUGAAGu-CUGUG-CUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 133080 | 0.7 | 0.930693 |
Target: 5'- cGAGCUggaCCUCGGgaUCGGccGCGCGACg -3' miRNA: 3'- uCUCGGa--GGAGUUgaAGUC--UGUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 115844 | 0.7 | 0.940556 |
Target: 5'- --cGCCUCCUCcucguACgagUCGGGgACGGCg -3' miRNA: 3'- ucuCGGAGGAGu----UGa--AGUCUgUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 109504 | 0.69 | 0.947758 |
Target: 5'- uGGGCgUCCUCAACgccguggagcaggUCaccgucuaccccGGGCACGACa -3' miRNA: 3'- uCUCGgAGGAGUUGa------------AG------------UCUGUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 36488 | 0.69 | 0.957436 |
Target: 5'- cGAGCCUCUucuuccuuagUCAACaUCGuagccagccgcGACACGACc -3' miRNA: 3'- uCUCGGAGG----------AGUUGaAGU-----------CUGUGCUG- -5' |
|||||||
15707 | 3' | -52.4 | NC_004065.1 | + | 85779 | 0.69 | 0.957436 |
Target: 5'- cAGAGaCgg--CGACUUCGGGCGCGGCg -3' miRNA: 3'- -UCUCgGaggaGUUGAAGUCUGUGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home