miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15707 3' -52.4 NC_004065.1 + 136050 0.67 0.986343
Target:  5'- gGGuGCUUCCcggCGGCUUCu-GCGCGACc -3'
miRNA:   3'- -UCuCGGAGGa--GUUGAAGucUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 88600 0.67 0.985844
Target:  5'- gAGAGCggucccauguacgaUUUCUCcGCUcuguuuUCAGGCGCGACg -3'
miRNA:   3'- -UCUCG--------------GAGGAGuUGA------AGUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 142730 0.67 0.985675
Target:  5'- uGGGcGCCUCgCUCGACUUCuGuagcggucucuccCGCGACg -3'
miRNA:   3'- -UCU-CGGAG-GAGUUGAAGuCu------------GUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 119062 0.67 0.984627
Target:  5'- uGAcCCgUCCUCAGCUgcaCGGuGCGCGGCa -3'
miRNA:   3'- uCUcGG-AGGAGUUGAa--GUC-UGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 109342 0.67 0.982751
Target:  5'- gGGAGCUggucgagaccaUCUUCAACgugagUCAGGcCugGACu -3'
miRNA:   3'- -UCUCGG-----------AGGAGUUGa----AGUCU-GugCUG- -5'
15707 3' -52.4 NC_004065.1 + 53722 0.68 0.978489
Target:  5'- gAGAGCUcggcggUCUUgAACcucUCGGGCACGACc -3'
miRNA:   3'- -UCUCGG------AGGAgUUGa--AGUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 33845 0.68 0.976087
Target:  5'- uGAGCCUcauguccagCCUCcGCaUCccgGGACACGACc -3'
miRNA:   3'- uCUCGGA---------GGAGuUGaAG---UCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 97964 0.68 0.976087
Target:  5'- cGuGCCUCCUgGACagccCGGGCgGCGGCg -3'
miRNA:   3'- uCuCGGAGGAgUUGaa--GUCUG-UGCUG- -5'
15707 3' -52.4 NC_004065.1 + 83852 0.68 0.970704
Target:  5'- gAGAGCUgcgcgCCUCGAacgugUUCAGcCugGACg -3'
miRNA:   3'- -UCUCGGa----GGAGUUg----AAGUCuGugCUG- -5'
15707 3' -52.4 NC_004065.1 + 138715 0.68 0.967709
Target:  5'- uGGAGCggUCCUCAGgUUCguGGACACGcCg -3'
miRNA:   3'- -UCUCGg-AGGAGUUgAAG--UCUGUGCuG- -5'
15707 3' -52.4 NC_004065.1 + 128694 0.68 0.967398
Target:  5'- cGGAcGCCUCCgccgcgcUCAGacUCGGugGCGGCg -3'
miRNA:   3'- -UCU-CGGAGG-------AGUUgaAGUCugUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 223366 0.69 0.964503
Target:  5'- -cGGCggCUUCAGCUgCGGGCACGGCc -3'
miRNA:   3'- ucUCGgaGGAGUUGAaGUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 140554 0.69 0.964503
Target:  5'- -cGGCUUCCUCuAGCggCGGGCugGAg -3'
miRNA:   3'- ucUCGGAGGAG-UUGaaGUCUGugCUg -5'
15707 3' -52.4 NC_004065.1 + 36488 0.69 0.957436
Target:  5'- cGAGCCUCUucuuccuuagUCAACaUCGuagccagccgcGACACGACc -3'
miRNA:   3'- uCUCGGAGG----------AGUUGaAGU-----------CUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 85779 0.69 0.957436
Target:  5'- cAGAGaCgg--CGACUUCGGGCGCGGCg -3'
miRNA:   3'- -UCUCgGaggaGUUGAAGUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 109504 0.69 0.947758
Target:  5'- uGGGCgUCCUCAACgccguggagcaggUCaccgucuaccccGGGCACGACa -3'
miRNA:   3'- uCUCGgAGGAGUUGa------------AG------------UCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 115844 0.7 0.940556
Target:  5'- --cGCCUCCUCcucguACgagUCGGGgACGGCg -3'
miRNA:   3'- ucuCGGAGGAGu----UGa--AGUCUgUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 133080 0.7 0.930693
Target:  5'- cGAGCUggaCCUCGGgaUCGGccGCGCGACg -3'
miRNA:   3'- uCUCGGa--GGAGUUgaAGUC--UGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 18526 0.7 0.930693
Target:  5'- cAGAGCCgaaCC-CGACgguUCGGACuCGACg -3'
miRNA:   3'- -UCUCGGa--GGaGUUGa--AGUCUGuGCUG- -5'
15707 3' -52.4 NC_004065.1 + 72008 0.7 0.930693
Target:  5'- uGAGCCUgCUgGACUUCucGACGCuGAUg -3'
miRNA:   3'- uCUCGGAgGAgUUGAAGu-CUGUG-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.