miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15707 3' -52.4 NC_004065.1 + 761 0.66 0.989331
Target:  5'- cGGGGCg-CCUCAccccGCcuuccgCGGACGCGGCg -3'
miRNA:   3'- -UCUCGgaGGAGU----UGaa----GUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 18526 0.7 0.930693
Target:  5'- cAGAGCCgaaCC-CGACgguUCGGACuCGACg -3'
miRNA:   3'- -UCUCGGa--GGaGUUGa--AGUCUGuGCUG- -5'
15707 3' -52.4 NC_004065.1 + 22899 0.78 0.561704
Target:  5'- -cAGCCUCC-CAACgcggUCAGugGCGGCg -3'
miRNA:   3'- ucUCGGAGGaGUUGa---AGUCugUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 24876 0.66 0.990497
Target:  5'- --cGCCUCCUCAACUggCGcuuucgcaacaccGGCgGCGGCg -3'
miRNA:   3'- ucuCGGAGGAGUUGAa-GU-------------CUG-UGCUG- -5'
15707 3' -52.4 NC_004065.1 + 30325 0.66 0.994602
Target:  5'- cGAGUCUgagCAGCUUU-GACACGGCg -3'
miRNA:   3'- uCUCGGAggaGUUGAAGuCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 33845 0.68 0.976087
Target:  5'- uGAGCCUcauguccagCCUCcGCaUCccgGGACACGACc -3'
miRNA:   3'- uCUCGGA---------GGAGuUGaAG---UCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 36488 0.69 0.957436
Target:  5'- cGAGCCUCUucuuccuuagUCAACaUCGuagccagccgcGACACGACc -3'
miRNA:   3'- uCUCGGAGG----------AGUUGaAGU-----------CUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 42716 0.66 0.989331
Target:  5'- cGAGCgCUCCUCcGCccCAGugaucgcaGCGCGGCg -3'
miRNA:   3'- uCUCG-GAGGAGuUGaaGUC--------UGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 48459 1.11 0.006894
Target:  5'- aAGAGCCUCCUCAACUUCAGACACGACa -3'
miRNA:   3'- -UCUCGGAGGAGUUGAAGUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 51790 0.67 0.986343
Target:  5'- -aGGUCaUCUUCAuCaUCGGACGCGACg -3'
miRNA:   3'- ucUCGG-AGGAGUuGaAGUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 53722 0.68 0.978489
Target:  5'- gAGAGCUcggcggUCUUgAACcucUCGGGCACGACc -3'
miRNA:   3'- -UCUCGG------AGGAgUUGa--AGUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 58497 0.66 0.994602
Target:  5'- gAGAaCUUCCUCAGCgaggagcccUUCGuGCGCGGCg -3'
miRNA:   3'- -UCUcGGAGGAGUUG---------AAGUcUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 65009 0.66 0.992829
Target:  5'- cGGAGCgCUCCUUGGCcgaCAGcgaGCGCGAg -3'
miRNA:   3'- -UCUCG-GAGGAGUUGaa-GUC---UGUGCUg -5'
15707 3' -52.4 NC_004065.1 + 71214 0.66 0.994602
Target:  5'- cGAGCCUCCUgAAg-UCGGAgAUcgGGCa -3'
miRNA:   3'- uCUCGGAGGAgUUgaAGUCUgUG--CUG- -5'
15707 3' -52.4 NC_004065.1 + 71663 0.81 0.418589
Target:  5'- aAGGGCCUCCUCAGCagCAGcaGCGGCg -3'
miRNA:   3'- -UCUCGGAGGAGUUGaaGUCugUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 72008 0.7 0.930693
Target:  5'- uGAGCCUgCUgGACUUCucGACGCuGAUg -3'
miRNA:   3'- uCUCGGAgGAgUUGAAGu-CUGUG-CUG- -5'
15707 3' -52.4 NC_004065.1 + 76713 0.74 0.760896
Target:  5'- aAGAGCgcgucgagguugcaCUCCUCGGCggggaCGGGCGCGGCg -3'
miRNA:   3'- -UCUCG--------------GAGGAGUUGaa---GUCUGUGCUG- -5'
15707 3' -52.4 NC_004065.1 + 83852 0.68 0.970704
Target:  5'- gAGAGCUgcgcgCCUCGAacgugUUCAGcCugGACg -3'
miRNA:   3'- -UCUCGGa----GGAGUUg----AAGUCuGugCUG- -5'
15707 3' -52.4 NC_004065.1 + 85062 0.66 0.989331
Target:  5'- cGAGCC-CUUCGAaga-GGACACGAg -3'
miRNA:   3'- uCUCGGaGGAGUUgaagUCUGUGCUg -5'
15707 3' -52.4 NC_004065.1 + 85779 0.69 0.957436
Target:  5'- cAGAGaCgg--CGACUUCGGGCGCGGCg -3'
miRNA:   3'- -UCUCgGaggaGUUGAAGUCUGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.