miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15707 5' -55.3 NC_004065.1 + 89600 0.66 0.985229
Target:  5'- cCUGCGGccUGUCG--UGCCUCGAGuucuGGc -3'
miRNA:   3'- -GGCGCC--AUAGCcuGCGGAGCUCuu--CC- -5'
15707 5' -55.3 NC_004065.1 + 64874 0.66 0.985229
Target:  5'- cCUGCGGaccgCGGcGCGCgUCgGAGAAGa -3'
miRNA:   3'- -GGCGCCaua-GCC-UGCGgAG-CUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 200442 0.66 0.985229
Target:  5'- aCCGCGGUcaccgCGGcCGCCgucagauagCGGGAGc- -3'
miRNA:   3'- -GGCGCCAua---GCCuGCGGa--------GCUCUUcc -5'
15707 5' -55.3 NC_004065.1 + 101358 0.66 0.985229
Target:  5'- gCGCGGUucgCGGcguuCGCCaaggCGAGAAa- -3'
miRNA:   3'- gGCGCCAua-GCCu---GCGGa---GCUCUUcc -5'
15707 5' -55.3 NC_004065.1 + 197424 0.66 0.985229
Target:  5'- aCCGCGGggagCuGGCGUCccuggUCGAGAGGc -3'
miRNA:   3'- -GGCGCCaua-GcCUGCGG-----AGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 39094 0.66 0.985229
Target:  5'- cCCGCGGcagaugUGGAgGCUgggggUCGGGGAGa -3'
miRNA:   3'- -GGCGCCaua---GCCUgCGG-----AGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 113891 0.66 0.983505
Target:  5'- uUCGCGGc-UCuuACGCCggaCGAGAGGGc -3'
miRNA:   3'- -GGCGCCauAGccUGCGGa--GCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 124908 0.66 0.983505
Target:  5'- aCgGCGGaccCGGACucgcugacgGCCggCGAGGAGGc -3'
miRNA:   3'- -GgCGCCauaGCCUG---------CGGa-GCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 197955 0.66 0.981633
Target:  5'- gCCGCgacGGcGUCGGACGUCgagUCGAGcGGcGg -3'
miRNA:   3'- -GGCG---CCaUAGCCUGCGG---AGCUCuUC-C- -5'
15707 5' -55.3 NC_004065.1 + 146968 0.66 0.981633
Target:  5'- -aGCGcGUcaUGGACGCCUgCGAagacGAGGGu -3'
miRNA:   3'- ggCGC-CAuaGCCUGCGGA-GCU----CUUCC- -5'
15707 5' -55.3 NC_004065.1 + 18157 0.66 0.981437
Target:  5'- -gGCGGUAUCguccgcgGGGCGuUCUCGGGAc-- -3'
miRNA:   3'- ggCGCCAUAG-------CCUGC-GGAGCUCUucc -5'
15707 5' -55.3 NC_004065.1 + 176640 0.66 0.979605
Target:  5'- uCCGUGGUG-CGagcagaugguGGCGCCUCGuccGcAAGGa -3'
miRNA:   3'- -GGCGCCAUaGC----------CUGCGGAGCu--C-UUCC- -5'
15707 5' -55.3 NC_004065.1 + 6518 0.66 0.979605
Target:  5'- uCCGCGGggaugCGGACGgCCgCGAGc--- -3'
miRNA:   3'- -GGCGCCaua--GCCUGC-GGaGCUCuucc -5'
15707 5' -55.3 NC_004065.1 + 127228 0.66 0.977417
Target:  5'- gCCGCGaGgAUCGGGCGCggUGGcGGGGa -3'
miRNA:   3'- -GGCGC-CaUAGCCUGCGgaGCUcUUCC- -5'
15707 5' -55.3 NC_004065.1 + 139691 0.66 0.977417
Target:  5'- aCGCGGacgaguUcgCGGACGCgCUUGccggauGAGGGa -3'
miRNA:   3'- gGCGCC------AuaGCCUGCG-GAGCu-----CUUCC- -5'
15707 5' -55.3 NC_004065.1 + 22324 0.66 0.977416
Target:  5'- gCGCGG-GUUGGGcCGCCgCGAccgaccGGAGGg -3'
miRNA:   3'- gGCGCCaUAGCCU-GCGGaGCU------CUUCC- -5'
15707 5' -55.3 NC_004065.1 + 190329 0.66 0.977188
Target:  5'- gCCGCGGcucauUGUCGGACaGaacagaaCUCucugugaGAGAGGGg -3'
miRNA:   3'- -GGCGCC-----AUAGCCUG-Cg------GAG-------CUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 199808 0.66 0.975059
Target:  5'- aCCGCGGcacgAUgGGGCGCgCcCGGcuGGAGGc -3'
miRNA:   3'- -GGCGCCa---UAgCCUGCG-GaGCU--CUUCC- -5'
15707 5' -55.3 NC_004065.1 + 125064 0.66 0.975059
Target:  5'- uUCGUGGacgcccggCGGACGUCggaCGAGGAGa -3'
miRNA:   3'- -GGCGCCaua-----GCCUGCGGa--GCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 184869 0.67 0.972528
Target:  5'- -aGCGGgcggCgGGACGCCgggaaCGAGAgAGGa -3'
miRNA:   3'- ggCGCCaua-G-CCUGCGGa----GCUCU-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.