miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15707 5' -55.3 NC_004065.1 + 48425 1.12 0.004835
Target:  5'- uCCGCGGUAUCGGACGCCUCGAGAAGGu -3'
miRNA:   3'- -GGCGCCAUAGCCUGCGGAGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 33666 0.82 0.311746
Target:  5'- gUCGCGaGUGUCGGaugcgccggggcgaGCGCCUCGAGAGGc -3'
miRNA:   3'- -GGCGC-CAUAGCC--------------UGCGGAGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 201538 0.81 0.364581
Target:  5'- aCCGCGGUggCGGACGCCuuccugcgccugUCGAGGcucaAGGu -3'
miRNA:   3'- -GGCGCCAuaGCCUGCGG------------AGCUCU----UCC- -5'
15707 5' -55.3 NC_004065.1 + 43316 0.8 0.380098
Target:  5'- gUGCGGUcuGUCGcgccGACGCCUCGAGAAGc -3'
miRNA:   3'- gGCGCCA--UAGC----CUGCGGAGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 142243 0.79 0.455136
Target:  5'- gCCGCGGUAUCGucgucaucgccGuCGCCUCcGGAGGGa -3'
miRNA:   3'- -GGCGCCAUAGC-----------CuGCGGAGcUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 202839 0.77 0.56611
Target:  5'- cCCGCGaGuUGUCGGACGCCuggUCGAacGGGg -3'
miRNA:   3'- -GGCGC-C-AUAGCCUGCGG---AGCUcuUCC- -5'
15707 5' -55.3 NC_004065.1 + 198526 0.77 0.56611
Target:  5'- aCGCGGUGUCGGACGCguugcacugCUCGuGGucguugaucGGGg -3'
miRNA:   3'- gGCGCCAUAGCCUGCG---------GAGCuCU---------UCC- -5'
15707 5' -55.3 NC_004065.1 + 10442 0.76 0.585418
Target:  5'- aCgGUGGUAUCGGugGCCugUCGGGugacGGGc -3'
miRNA:   3'- -GgCGCCAUAGCCugCGG--AGCUCu---UCC- -5'
15707 5' -55.3 NC_004065.1 + 91854 0.75 0.641927
Target:  5'- gCGCGGUca-GGACGCCgaugagcacauaCGAGggGGg -3'
miRNA:   3'- gGCGCCAuagCCUGCGGa-----------GCUCuuCC- -5'
15707 5' -55.3 NC_004065.1 + 78738 0.75 0.66337
Target:  5'- -gGCGGUGUCGGGCGCgCUUGAcgcggcgcGGAGa -3'
miRNA:   3'- ggCGCCAUAGCCUGCG-GAGCU--------CUUCc -5'
15707 5' -55.3 NC_004065.1 + 47014 0.75 0.673085
Target:  5'- uUCGgGGUGUCGGGgGaCCUgGAGGAGa -3'
miRNA:   3'- -GGCgCCAUAGCCUgC-GGAgCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 147857 0.74 0.721051
Target:  5'- aCCGCGGUGUUGGucugGuCCUgCGAGAGGa -3'
miRNA:   3'- -GGCGCCAUAGCCug--C-GGA-GCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 138229 0.74 0.721052
Target:  5'- uCUGCGaUGUCGaGGCGCUcgccgccgUCGAGGAGGg -3'
miRNA:   3'- -GGCGCcAUAGC-CUGCGG--------AGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 125407 0.73 0.757309
Target:  5'- cCCGCaGGUcguggaaGUCGGccggcgccaGCGCCUCGGGcAGGu -3'
miRNA:   3'- -GGCG-CCA-------UAGCC---------UGCGGAGCUCuUCC- -5'
15707 5' -55.3 NC_004065.1 + 118002 0.72 0.781543
Target:  5'- gCCGCGGU-UCGGGCuCCUCGuccuccucccgacGGAGGa -3'
miRNA:   3'- -GGCGCCAuAGCCUGcGGAGCu------------CUUCC- -5'
15707 5' -55.3 NC_004065.1 + 31400 0.72 0.810775
Target:  5'- gCgGCGGUGUC-GAUGCC-CGAGucGGa -3'
miRNA:   3'- -GgCGCCAUAGcCUGCGGaGCUCuuCC- -5'
15707 5' -55.3 NC_004065.1 + 152311 0.71 0.824771
Target:  5'- gCgGCGGUGccggCGGGgacgaugacggcuuCGaCCUCGAGGAGGa -3'
miRNA:   3'- -GgCGCCAUa---GCCU--------------GC-GGAGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 208433 0.71 0.826387
Target:  5'- aCCGCaGUugGUCGGAUGCCUCGuuguacacaccgcGGAcGGu -3'
miRNA:   3'- -GGCGcCA--UAGCCUGCGGAGC-------------UCUuCC- -5'
15707 5' -55.3 NC_004065.1 + 91209 0.71 0.842966
Target:  5'- gCGCGGcAUCGG-CGCCgccgGAGAAGa -3'
miRNA:   3'- gGCGCCaUAGCCuGCGGag--CUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 80562 0.71 0.850594
Target:  5'- cCCGgaGGgcuUCGGGgucgauaGCCUCGGGggGGa -3'
miRNA:   3'- -GGCg-CCau-AGCCUg------CGGAGCUCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.