miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15707 5' -55.3 NC_004065.1 + 55492 0.67 0.972528
Target:  5'- uUGCGGaAUCGcauGACGCCgagcaCGAGgAAGGu -3'
miRNA:   3'- gGCGCCaUAGC---CUGCGGa----GCUC-UUCC- -5'
15707 5' -55.3 NC_004065.1 + 98707 0.67 0.972527
Target:  5'- aCCGCGau-UCGGGCGCCUCu------ -3'
miRNA:   3'- -GGCGCcauAGCCUGCGGAGcucuucc -5'
15707 5' -55.3 NC_004065.1 + 33754 0.67 0.969815
Target:  5'- uUGCaGGaGUCGGAgGCCUCGGGc--- -3'
miRNA:   3'- gGCG-CCaUAGCCUgCGGAGCUCuucc -5'
15707 5' -55.3 NC_004065.1 + 200815 0.67 0.969815
Target:  5'- gCGCGGggAUCGGACGgggCGAcGGGGa -3'
miRNA:   3'- gGCGCCa-UAGCCUGCggaGCUcUUCC- -5'
15707 5' -55.3 NC_004065.1 + 30821 0.67 0.969534
Target:  5'- gUCGCGGUGcgcguccUCGcGAC-CCUCGAcGAAGc -3'
miRNA:   3'- -GGCGCCAU-------AGC-CUGcGGAGCU-CUUCc -5'
15707 5' -55.3 NC_004065.1 + 68263 0.67 0.966917
Target:  5'- gCUGCuGGcGUCGaagauccuGGCGCUguUCGAGGAGGg -3'
miRNA:   3'- -GGCG-CCaUAGC--------CUGCGG--AGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 201739 0.67 0.966917
Target:  5'- aCCGCGGgccGUCGGGuCGaCCgggaucucgCGGGGAGc -3'
miRNA:   3'- -GGCGCCa--UAGCCU-GC-GGa--------GCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 34007 0.67 0.966917
Target:  5'- aCUGCGGaucUCGGugGCCUUGcccgacucccuGGAccAGGc -3'
miRNA:   3'- -GGCGCCau-AGCCugCGGAGC-----------UCU--UCC- -5'
15707 5' -55.3 NC_004065.1 + 199981 0.67 0.966917
Target:  5'- cCUGCGG-GUCGGGCaggauccuuuucGCgUCGAGucGGu -3'
miRNA:   3'- -GGCGCCaUAGCCUG------------CGgAGCUCuuCC- -5'
15707 5' -55.3 NC_004065.1 + 54566 0.67 0.966617
Target:  5'- gCCGUGGUcacugGUCGGggagguggcggagACGauuagaCUUGAGGAGGa -3'
miRNA:   3'- -GGCGCCA-----UAGCC-------------UGCg-----GAGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 162415 0.67 0.963827
Target:  5'- gCCGUacGGUGcgaCGGACGCCgcgcuaucUCGAGccGAGGc -3'
miRNA:   3'- -GGCG--CCAUa--GCCUGCGG--------AGCUC--UUCC- -5'
15707 5' -55.3 NC_004065.1 + 120874 0.67 0.960541
Target:  5'- gCCGCGG---CGGACGCCaCGAGc--- -3'
miRNA:   3'- -GGCGCCauaGCCUGCGGaGCUCuucc -5'
15707 5' -55.3 NC_004065.1 + 102806 0.67 0.960541
Target:  5'- cCCGgGGaggugGUCGGGCGCggCGGGAGc- -3'
miRNA:   3'- -GGCgCCa----UAGCCUGCGgaGCUCUUcc -5'
15707 5' -55.3 NC_004065.1 + 22087 0.67 0.960541
Target:  5'- gCCGCGGUAUCccccGGGCGgg-CGAGGAu- -3'
miRNA:   3'- -GGCGCCAUAG----CCUGCggaGCUCUUcc -5'
15707 5' -55.3 NC_004065.1 + 89563 0.67 0.960541
Target:  5'- uUGCGGUAgCGGccCGUCUCcuGGAAGGa -3'
miRNA:   3'- gGCGCCAUaGCCu-GCGGAGc-UCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 121996 0.67 0.957055
Target:  5'- cUCGCGGUGUUgucgaaggucgGGAgGUCggGAGggGGc -3'
miRNA:   3'- -GGCGCCAUAG-----------CCUgCGGagCUCuuCC- -5'
15707 5' -55.3 NC_004065.1 + 19636 0.68 0.953364
Target:  5'- aUCGUGGgauaggcugCGGGCaGCCaaGGGAAGGg -3'
miRNA:   3'- -GGCGCCaua------GCCUG-CGGagCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 172177 0.68 0.953364
Target:  5'- uCCGCGaucGUAucgaucUCGGugGuuCCUCcGAGAAGGc -3'
miRNA:   3'- -GGCGC---CAU------AGCCugC--GGAG-CUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 57131 0.68 0.949465
Target:  5'- aCGCuGGauaccagGUCGGAgGCCcgUGGGAGGGc -3'
miRNA:   3'- gGCG-CCa------UAGCCUgCGGa-GCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 201424 0.68 0.941033
Target:  5'- gCCGCuuGGUGUCGG-CGCUgcugCGuGAcgAGGa -3'
miRNA:   3'- -GGCG--CCAUAGCCuGCGGa---GCuCU--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.