miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15707 5' -55.3 NC_004065.1 + 6518 0.66 0.979605
Target:  5'- uCCGCGGggaugCGGACGgCCgCGAGc--- -3'
miRNA:   3'- -GGCGCCaua--GCCUGC-GGaGCUCuucc -5'
15707 5' -55.3 NC_004065.1 + 10442 0.76 0.585418
Target:  5'- aCgGUGGUAUCGGugGCCugUCGGGugacGGGc -3'
miRNA:   3'- -GgCGCCAUAGCCugCGG--AGCUCu---UCC- -5'
15707 5' -55.3 NC_004065.1 + 17889 0.69 0.91617
Target:  5'- gCgGCGGa--CGGACGCCcgUCGAGAGa- -3'
miRNA:   3'- -GgCGCCauaGCCUGCGG--AGCUCUUcc -5'
15707 5' -55.3 NC_004065.1 + 18157 0.66 0.981437
Target:  5'- -gGCGGUAUCguccgcgGGGCGuUCUCGGGAc-- -3'
miRNA:   3'- ggCGCCAUAG-------CCUGC-GGAGCUCUucc -5'
15707 5' -55.3 NC_004065.1 + 19636 0.68 0.953364
Target:  5'- aUCGUGGgauaggcugCGGGCaGCCaaGGGAAGGg -3'
miRNA:   3'- -GGCGCCaua------GCCUG-CGGagCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 21092 0.68 0.939694
Target:  5'- cUCGCGGac-CGG-CGCuuuccucgacgaccCUCGAGAAGGa -3'
miRNA:   3'- -GGCGCCauaGCCuGCG--------------GAGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 22087 0.67 0.960541
Target:  5'- gCCGCGGUAUCccccGGGCGgg-CGAGGAu- -3'
miRNA:   3'- -GGCGCCAUAG----CCUGCggaGCUCUUcc -5'
15707 5' -55.3 NC_004065.1 + 22324 0.66 0.977416
Target:  5'- gCGCGG-GUUGGGcCGCCgCGAccgaccGGAGGg -3'
miRNA:   3'- gGCGCCaUAGCCU-GCGGaGCU------CUUCC- -5'
15707 5' -55.3 NC_004065.1 + 24612 0.71 0.858041
Target:  5'- gCCGcCGGUGUUGcGaaaGCGCCagUUGAGGAGGc -3'
miRNA:   3'- -GGC-GCCAUAGC-C---UGCGG--AGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 25747 0.7 0.879248
Target:  5'- gUCGUGGUcgCcaGACGCCUCGucgggcggcGGGAGGu -3'
miRNA:   3'- -GGCGCCAuaGc-CUGCGGAGC---------UCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 30821 0.67 0.969534
Target:  5'- gUCGCGGUGcgcguccUCGcGAC-CCUCGAcGAAGc -3'
miRNA:   3'- -GGCGCCAU-------AGC-CUGcGGAGCU-CUUCc -5'
15707 5' -55.3 NC_004065.1 + 31400 0.72 0.810775
Target:  5'- gCgGCGGUGUC-GAUGCC-CGAGucGGa -3'
miRNA:   3'- -GgCGCCAUAGcCUGCGGaGCUCuuCC- -5'
15707 5' -55.3 NC_004065.1 + 33666 0.82 0.311746
Target:  5'- gUCGCGaGUGUCGGaugcgccggggcgaGCGCCUCGAGAGGc -3'
miRNA:   3'- -GGCGC-CAUAGCC--------------UGCGGAGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 33754 0.67 0.969815
Target:  5'- uUGCaGGaGUCGGAgGCCUCGGGc--- -3'
miRNA:   3'- gGCG-CCaUAGCCUgCGGAGCUCuucc -5'
15707 5' -55.3 NC_004065.1 + 34007 0.67 0.966917
Target:  5'- aCUGCGGaucUCGGugGCCUUGcccgacucccuGGAccAGGc -3'
miRNA:   3'- -GGCGCCau-AGCCugCGGAGC-----------UCU--UCC- -5'
15707 5' -55.3 NC_004065.1 + 35009 0.69 0.904707
Target:  5'- aUCGCGucAUCGGACGCUcCGAGAu-- -3'
miRNA:   3'- -GGCGCcaUAGCCUGCGGaGCUCUucc -5'
15707 5' -55.3 NC_004065.1 + 39094 0.66 0.985229
Target:  5'- cCCGCGGcagaugUGGAgGCUgggggUCGGGGAGa -3'
miRNA:   3'- -GGCGCCaua---GCCUgCGG-----AGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 40803 0.68 0.936494
Target:  5'- aCCGC-GUAUaaucuacugCGG-CGgCUCGAGGAGGa -3'
miRNA:   3'- -GGCGcCAUA---------GCCuGCgGAGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 43316 0.8 0.380098
Target:  5'- gUGCGGUcuGUCGcgccGACGCCUCGAGAAGc -3'
miRNA:   3'- gGCGCCA--UAGC----CUGCGGAGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 47014 0.75 0.673085
Target:  5'- uUCGgGGUGUCGGGgGaCCUgGAGGAGa -3'
miRNA:   3'- -GGCgCCAUAGCCUgC-GGAgCUCUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.