miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15707 5' -55.3 NC_004065.1 + 134344 0.68 0.941033
Target:  5'- aCGCGGaUGUCauagGGAgCGUgaUCGAGggGGg -3'
miRNA:   3'- gGCGCC-AUAG----CCU-GCGg-AGCUCuuCC- -5'
15707 5' -55.3 NC_004065.1 + 213432 0.7 0.885923
Target:  5'- uCCGCagcgguagaGGUAUCGGGCuccguaGUCUCGGGcuGAGGu -3'
miRNA:   3'- -GGCG---------CCAUAGCCUG------CGGAGCUC--UUCC- -5'
15707 5' -55.3 NC_004065.1 + 92035 0.7 0.885923
Target:  5'- aCCGCGGgcUCuuGGCGCgCUCGAGGc-- -3'
miRNA:   3'- -GGCGCCauAGc-CUGCG-GAGCUCUucc -5'
15707 5' -55.3 NC_004065.1 + 149014 0.7 0.892393
Target:  5'- gCUGCGGcgAUCGGAaccucgggcUGaCCUCGGGAGcGGg -3'
miRNA:   3'- -GGCGCCa-UAGCCU---------GC-GGAGCUCUU-CC- -5'
15707 5' -55.3 NC_004065.1 + 107452 0.69 0.904708
Target:  5'- gUCGUGG--UCGGGCGUCUgcCGcAGGAGGa -3'
miRNA:   3'- -GGCGCCauAGCCUGCGGA--GC-UCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 55437 0.69 0.904708
Target:  5'- gCGCGGgucuucgaGUCGG-CGCUggGGGAAGGu -3'
miRNA:   3'- gGCGCCa-------UAGCCuGCGGagCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 17889 0.69 0.91617
Target:  5'- gCgGCGGa--CGGACGCCcgUCGAGAGa- -3'
miRNA:   3'- -GgCGCCauaGCCUGCGG--AGCUCUUcc -5'
15707 5' -55.3 NC_004065.1 + 204339 0.69 0.926767
Target:  5'- gCCGUGGUAgucggGGACGUCgUGAuGggGGg -3'
miRNA:   3'- -GGCGCCAUag---CCUGCGGaGCU-CuuCC- -5'
15707 5' -55.3 NC_004065.1 + 113924 0.69 0.93174
Target:  5'- aUCGCGcGUGUCGacGACGCggcgCUCGGGGgcuGGGa -3'
miRNA:   3'- -GGCGC-CAUAGC--CUGCG----GAGCUCU---UCC- -5'
15707 5' -55.3 NC_004065.1 + 152765 0.7 0.872374
Target:  5'- -aGCGGUAaCGGugGCggUGAGAAGu -3'
miRNA:   3'- ggCGCCAUaGCCugCGgaGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 104161 0.7 0.872374
Target:  5'- gCgGCGGUGUCGGucgcCGCUUCGGuGccGGa -3'
miRNA:   3'- -GgCGCCAUAGCCu---GCGGAGCU-CuuCC- -5'
15707 5' -55.3 NC_004065.1 + 194121 0.71 0.858041
Target:  5'- cCCGCgGGUAUCGGuACGgCCUCGucugucccGAcAGGg -3'
miRNA:   3'- -GGCG-CCAUAGCC-UGC-GGAGCu-------CU-UCC- -5'
15707 5' -55.3 NC_004065.1 + 125407 0.73 0.757309
Target:  5'- cCCGCaGGUcguggaaGUCGGccggcgccaGCGCCUCGGGcAGGu -3'
miRNA:   3'- -GGCG-CCA-------UAGCC---------UGCGGAGCUCuUCC- -5'
15707 5' -55.3 NC_004065.1 + 118002 0.72 0.781543
Target:  5'- gCCGCGGU-UCGGGCuCCUCGuccuccucccgacGGAGGa -3'
miRNA:   3'- -GGCGCCAuAGCCUGcGGAGCu------------CUUCC- -5'
15707 5' -55.3 NC_004065.1 + 152311 0.71 0.824771
Target:  5'- gCgGCGGUGccggCGGGgacgaugacggcuuCGaCCUCGAGGAGGa -3'
miRNA:   3'- -GgCGCCAUa---GCCU--------------GC-GGAGCUCUUCC- -5'
15707 5' -55.3 NC_004065.1 + 91209 0.71 0.842966
Target:  5'- gCGCGGcAUCGG-CGCCgccgGAGAAGa -3'
miRNA:   3'- gGCGCCaUAGCCuGCGGag--CUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 71544 0.71 0.850594
Target:  5'- aUCGCGGga-CGGACGUgUUCGGGGAGa -3'
miRNA:   3'- -GGCGCCauaGCCUGCG-GAGCUCUUCc -5'
15707 5' -55.3 NC_004065.1 + 80562 0.71 0.850594
Target:  5'- cCCGgaGGgcuUCGGGgucgauaGCCUCGGGggGGa -3'
miRNA:   3'- -GGCg-CCau-AGCCUg------CGGAGCUCuuCC- -5'
15707 5' -55.3 NC_004065.1 + 229761 0.71 0.850594
Target:  5'- cCCGCGGUAgucgugcCGGACaGCCg-GAcGAAGGc -3'
miRNA:   3'- -GGCGCCAUa------GCCUG-CGGagCU-CUUCC- -5'
15707 5' -55.3 NC_004065.1 + 24612 0.71 0.858041
Target:  5'- gCCGcCGGUGUUGcGaaaGCGCCagUUGAGGAGGc -3'
miRNA:   3'- -GGC-GCCAUAGC-C---UGCGG--AGCUCUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.