miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15708 3' -56.6 NC_004065.1 + 111754 0.66 0.950639
Target:  5'- gUGGUCGuCAaguACGUcgaggCGCCGGCgagcuccacgcguccGUCGACg -3'
miRNA:   3'- -ACCAGCcGU---UGUA-----GCGGCCG---------------UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 118411 0.66 0.949017
Target:  5'- gGcGUCGGgauCGAUcUCGCCGGCGaacaCGGCg -3'
miRNA:   3'- aC-CAGCC---GUUGuAGCGGCCGUa---GCUG- -5'
15708 3' -56.6 NC_004065.1 + 135569 0.66 0.949017
Target:  5'- uUGGagGGCGGCucgaGCgGGCcgaaGUCGGCg -3'
miRNA:   3'- -ACCagCCGUUGuag-CGgCCG----UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 80636 0.66 0.949017
Target:  5'- cGGUCcuCGAUAUgGCCGGCGgucgCGAg -3'
miRNA:   3'- aCCAGccGUUGUAgCGGCCGUa---GCUg -5'
15708 3' -56.6 NC_004065.1 + 64208 0.66 0.949017
Target:  5'- cGGgcggaGGCAGUGUCGgCGGCGagGACa -3'
miRNA:   3'- aCCag---CCGUUGUAGCgGCCGUagCUG- -5'
15708 3' -56.6 NC_004065.1 + 99538 0.66 0.949017
Target:  5'- cUGGUCGGCGcuccCGucUCGCCgcGGCGgaCGGCc -3'
miRNA:   3'- -ACCAGCCGUu---GU--AGCGG--CCGUa-GCUG- -5'
15708 3' -56.6 NC_004065.1 + 124995 0.66 0.949017
Target:  5'- gGGUCGuGCAgcgcgcucACGUaCGCCaGCAgCGGCu -3'
miRNA:   3'- aCCAGC-CGU--------UGUA-GCGGcCGUaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 7162 0.66 0.949017
Target:  5'- aGGUCcGUAGC--CGUCGGUcuGUCGACa -3'
miRNA:   3'- aCCAGcCGUUGuaGCGGCCG--UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 112858 0.66 0.949017
Target:  5'- -cGUCGGaCAGCAgcUCGuCCGGCA--GACu -3'
miRNA:   3'- acCAGCC-GUUGU--AGC-GGCCGUagCUG- -5'
15708 3' -56.6 NC_004065.1 + 57410 0.66 0.947778
Target:  5'- cGG-CGGCAuauaacacagacguACGUCGaUCGGCGuuuucgcuucuUCGACg -3'
miRNA:   3'- aCCaGCCGU--------------UGUAGC-GGCCGU-----------AGCUG- -5'
15708 3' -56.6 NC_004065.1 + 122465 0.66 0.944809
Target:  5'- gGGUCagGGUGGCGUC-CCGGUAgcgcaCGACc -3'
miRNA:   3'- aCCAG--CCGUUGUAGcGGCCGUa----GCUG- -5'
15708 3' -56.6 NC_004065.1 + 109777 0.66 0.944809
Target:  5'- cGGUCaGCAgggcaggcgcuACGcCGCgGGCAcguUCGACg -3'
miRNA:   3'- aCCAGcCGU-----------UGUaGCGgCCGU---AGCUG- -5'
15708 3' -56.6 NC_004065.1 + 36156 0.66 0.944809
Target:  5'- gUGGaUCGGCGGgaGUCGCC-GCGgacgaagCGACg -3'
miRNA:   3'- -ACC-AGCCGUUg-UAGCGGcCGUa------GCUG- -5'
15708 3' -56.6 NC_004065.1 + 113008 0.66 0.944809
Target:  5'- cGGUCGGCAcgugagcgcGCAUCGCCucguaCAUCu-- -3'
miRNA:   3'- aCCAGCCGU---------UGUAGCGGcc---GUAGcug -5'
15708 3' -56.6 NC_004065.1 + 141360 0.66 0.944809
Target:  5'- cGcGUCGGCGAUGcCGCUgaaGGCG-CGGCg -3'
miRNA:   3'- aC-CAGCCGUUGUaGCGG---CCGUaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 41310 0.66 0.944809
Target:  5'- --uUCGGCuuCGUCGCCGcGCGgccCGAg -3'
miRNA:   3'- accAGCCGuuGUAGCGGC-CGUa--GCUg -5'
15708 3' -56.6 NC_004065.1 + 62094 0.66 0.944376
Target:  5'- cGGcagCGGCAGCGgcggucguuacgcUCGCgggaggCGGCAUCGuCg -3'
miRNA:   3'- aCCa--GCCGUUGU-------------AGCG------GCCGUAGCuG- -5'
15708 3' -56.6 NC_004065.1 + 222053 0.66 0.944376
Target:  5'- aUGGUCGGUc-CGUCaCCGGCAcccuccgUCGGg -3'
miRNA:   3'- -ACCAGCCGuuGUAGcGGCCGU-------AGCUg -5'
15708 3' -56.6 NC_004065.1 + 128379 0.66 0.942178
Target:  5'- gGGcuUCGGCGGCGagaGCCGGCugugggggccgagCGGCa -3'
miRNA:   3'- aCC--AGCCGUUGUag-CGGCCGua-----------GCUG- -5'
15708 3' -56.6 NC_004065.1 + 80227 0.66 0.940832
Target:  5'- cGGUCGGCGACcgUGUCGaGUAcguccucacccugccCGACg -3'
miRNA:   3'- aCCAGCCGUUGuaGCGGC-CGUa--------------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.