miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15708 3' -56.6 NC_004065.1 + 149645 0.66 0.925747
Target:  5'- -cGUCGGCAggcccuGCAcgCGCCGcagcGCGUUGACc -3'
miRNA:   3'- acCAGCCGU------UGUa-GCGGC----CGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 135569 0.66 0.949017
Target:  5'- uUGGagGGCGGCucgaGCgGGCcgaaGUCGGCg -3'
miRNA:   3'- -ACCagCCGUUGuag-CGgCCG----UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 113008 0.66 0.944809
Target:  5'- cGGUCGGCAcgugagcgcGCAUCGCCucguaCAUCu-- -3'
miRNA:   3'- aCCAGCCGU---------UGUAGCGGcc---GUAGcug -5'
15708 3' -56.6 NC_004065.1 + 116135 0.66 0.930849
Target:  5'- cUGGUCGGCGuccugCGgCGGC-UCGGg -3'
miRNA:   3'- -ACCAGCCGUugua-GCgGCCGuAGCUg -5'
15708 3' -56.6 NC_004065.1 + 109244 0.66 0.925747
Target:  5'- cGG-CGGUAGCggCGUCGGUGaCGAUg -3'
miRNA:   3'- aCCaGCCGUUGuaGCGGCCGUaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 25545 0.66 0.940379
Target:  5'- -----aGCGACAgacggCGUCGGCGUCGGCc -3'
miRNA:   3'- accagcCGUUGUa----GCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 151423 0.66 0.940379
Target:  5'- aGG-CGGCGcgacgACGUCGCguucgaCGGCgacGUCGACc -3'
miRNA:   3'- aCCaGCCGU-----UGUAGCG------GCCG---UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 24533 0.66 0.925747
Target:  5'- cGG-CGGCAGCGaCGaCGGCAgcggaGACg -3'
miRNA:   3'- aCCaGCCGUUGUaGCgGCCGUag---CUG- -5'
15708 3' -56.6 NC_004065.1 + 109777 0.66 0.944809
Target:  5'- cGGUCaGCAgggcaggcgcuACGcCGCgGGCAcguUCGACg -3'
miRNA:   3'- aCCAGcCGU-----------UGUaGCGgCCGU---AGCUG- -5'
15708 3' -56.6 NC_004065.1 + 57038 0.66 0.925747
Target:  5'- ---aUGGCu-CGUCGUCGGCA-CGACg -3'
miRNA:   3'- accaGCCGuuGUAGCGGCCGUaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 36156 0.66 0.944809
Target:  5'- gUGGaUCGGCGGgaGUCGCC-GCGgacgaagCGACg -3'
miRNA:   3'- -ACC-AGCCGUUg-UAGCGGcCGUa------GCUG- -5'
15708 3' -56.6 NC_004065.1 + 56541 0.66 0.925747
Target:  5'- gUGG-CGGCGACAcCGCaGGCGcUGAUg -3'
miRNA:   3'- -ACCaGCCGUUGUaGCGgCCGUaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 164652 0.66 0.925747
Target:  5'- cGGgucgCGGCGcGCGUCGCCaGGUcgAUcCGACc -3'
miRNA:   3'- aCCa---GCCGU-UGUAGCGG-CCG--UA-GCUG- -5'
15708 3' -56.6 NC_004065.1 + 65551 0.66 0.940379
Target:  5'- cGcUgGGC-GCGUCGCCGGCGggucgCGAg -3'
miRNA:   3'- aCcAgCCGuUGUAGCGGCCGUa----GCUg -5'
15708 3' -56.6 NC_004065.1 + 122465 0.66 0.944809
Target:  5'- gGGUCagGGUGGCGUC-CCGGUAgcgcaCGACc -3'
miRNA:   3'- aCCAG--CCGUUGUAGcGGCCGUa----GCUG- -5'
15708 3' -56.6 NC_004065.1 + 109869 0.66 0.925747
Target:  5'- cGGgCGGUgccaccGGCGUCGCCGcggccGCGUCGGg -3'
miRNA:   3'- aCCaGCCG------UUGUAGCGGC-----CGUAGCUg -5'
15708 3' -56.6 NC_004065.1 + 57410 0.66 0.947778
Target:  5'- cGG-CGGCAuauaacacagacguACGUCGaUCGGCGuuuucgcuucuUCGACg -3'
miRNA:   3'- aCCaGCCGU--------------UGUAGC-GGCCGU-----------AGCUG- -5'
15708 3' -56.6 NC_004065.1 + 62094 0.66 0.944376
Target:  5'- cGGcagCGGCAGCGgcggucguuacgcUCGCgggaggCGGCAUCGuCg -3'
miRNA:   3'- aCCa--GCCGUUGU-------------AGCG------GCCGUAGCuG- -5'
15708 3' -56.6 NC_004065.1 + 222053 0.66 0.944376
Target:  5'- aUGGUCGGUc-CGUCaCCGGCAcccuccgUCGGg -3'
miRNA:   3'- -ACCAGCCGuuGUAGcGGCCGU-------AGCUg -5'
15708 3' -56.6 NC_004065.1 + 128379 0.66 0.942178
Target:  5'- gGGcuUCGGCGGCGagaGCCGGCugugggggccgagCGGCa -3'
miRNA:   3'- aCC--AGCCGUUGUag-CGGCCGua-----------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.