miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15708 3' -56.6 NC_004065.1 + 48767 1.1 0.0032
Target:  5'- aUGGUCGGCAACAUCGCCGGCAUCGACg -3'
miRNA:   3'- -ACCAGCCGUUGUAGCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 146542 0.85 0.141449
Target:  5'- uUGGUCGGCcugcccGACAUCGUCGGCGUCG-Cg -3'
miRNA:   3'- -ACCAGCCG------UUGUAGCGGCCGUAGCuG- -5'
15708 3' -56.6 NC_004065.1 + 163648 0.83 0.176736
Target:  5'- --cUCGGCGACAUCGUCGGCuUCGGCg -3'
miRNA:   3'- accAGCCGUUGUAGCGGCCGuAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 164809 0.83 0.19014
Target:  5'- cGGUCGGCGcCGcCGCCGGC-UCGACa -3'
miRNA:   3'- aCCAGCCGUuGUaGCGGCCGuAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 71759 0.81 0.235804
Target:  5'- cGGUCGGUGACcgUGuuGGCGUCGAUc -3'
miRNA:   3'- aCCAGCCGUUGuaGCggCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 22925 0.8 0.269257
Target:  5'- cGGUCGGCGGuuccgucucgucguCAgauugUCGCCGGCAUCGAg -3'
miRNA:   3'- aCCAGCCGUU--------------GU-----AGCGGCCGUAGCUg -5'
15708 3' -56.6 NC_004065.1 + 170290 0.79 0.321798
Target:  5'- cGGUCGGCAcCAUCGCCGccgggucgguaaaCAUCGGCa -3'
miRNA:   3'- aCCAGCCGUuGUAGCGGCc------------GUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 114352 0.78 0.346661
Target:  5'- cGGcCGGCAGC-UCGCUGGCuUUGACg -3'
miRNA:   3'- aCCaGCCGUUGuAGCGGCCGuAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 69730 0.77 0.41888
Target:  5'- cUGGUUGGCcGCGUaccgcaGCCGGCG-CGACa -3'
miRNA:   3'- -ACCAGCCGuUGUAg-----CGGCCGUaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 19395 0.76 0.436128
Target:  5'- gGGUaguaUGGgGACGUuaccCGCCGGCGUCGGCg -3'
miRNA:   3'- aCCA----GCCgUUGUA----GCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 152306 0.76 0.453778
Target:  5'- cGG-CGGCGGCggUGCCGGCGggGACg -3'
miRNA:   3'- aCCaGCCGUUGuaGCGGCCGUagCUG- -5'
15708 3' -56.6 NC_004065.1 + 32938 0.76 0.462747
Target:  5'- cGGUCGGCucccgcGCGgauGCgGGCGUCGACg -3'
miRNA:   3'- aCCAGCCGu-----UGUag-CGgCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 127929 0.75 0.480959
Target:  5'- cGGUcCGGC--CAUCGCCGcccGCGUCGGCg -3'
miRNA:   3'- aCCA-GCCGuuGUAGCGGC---CGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 108830 0.74 0.566662
Target:  5'- cGGUUGG-AGCGgauggUGCCGGUGUCGGCg -3'
miRNA:   3'- aCCAGCCgUUGUa----GCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 73979 0.74 0.566662
Target:  5'- cGG-CGGCAGCAguggCGCCaGCAgCGGCg -3'
miRNA:   3'- aCCaGCCGUUGUa---GCGGcCGUaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 136780 0.74 0.566662
Target:  5'- cGGUCGGC-ACGUCGaucccaCCGGCcgcuucGUCGGCu -3'
miRNA:   3'- aCCAGCCGuUGUAGC------GGCCG------UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 166134 0.74 0.576471
Target:  5'- -cGUCGGCAgagACGUcggCGCCGGCGgcagCGGCg -3'
miRNA:   3'- acCAGCCGU---UGUA---GCGGCCGUa---GCUG- -5'
15708 3' -56.6 NC_004065.1 + 144782 0.74 0.576471
Target:  5'- aUGGUgcUGGCcAUGUCGCUGGCGcUCGGCu -3'
miRNA:   3'- -ACCA--GCCGuUGUAGCGGCCGU-AGCUG- -5'
15708 3' -56.6 NC_004065.1 + 120562 0.74 0.590264
Target:  5'- cGGUCGGCGcgaGCGggcgggaccuccggCGCCGGUcUCGGCc -3'
miRNA:   3'- aCCAGCCGU---UGUa-------------GCGGCCGuAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 19407 0.73 0.596194
Target:  5'- cGGcaUCGGCAGCAUCGUCGuCGuccUCGGCa -3'
miRNA:   3'- aCC--AGCCGUUGUAGCGGCcGU---AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.