miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15708 3' -56.6 NC_004065.1 + 102682 0.66 0.940379
Target:  5'- aGGUC-GCAGaggggaggCGCCGGCuccucccguccGUCGACg -3'
miRNA:   3'- aCCAGcCGUUgua-----GCGGCCG-----------UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 153065 0.66 0.940379
Target:  5'- aGGUCGuaGAaaucguccuCGUCGUCGGaggucaGUCGACg -3'
miRNA:   3'- aCCAGCcgUU---------GUAGCGGCCg-----UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 110212 0.66 0.940379
Target:  5'- -cGUCGGaGACcgCGCCGGagaggCGACu -3'
miRNA:   3'- acCAGCCgUUGuaGCGGCCgua--GCUG- -5'
15708 3' -56.6 NC_004065.1 + 65551 0.66 0.940379
Target:  5'- cGcUgGGC-GCGUCGCCGGCGggucgCGAg -3'
miRNA:   3'- aCcAgCCGuUGUAGCGGCCGUa----GCUg -5'
15708 3' -56.6 NC_004065.1 + 151423 0.66 0.940379
Target:  5'- aGG-CGGCGcgacgACGUCGCguucgaCGGCgacGUCGACc -3'
miRNA:   3'- aCCaGCCGU-----UGUAGCG------GCCG---UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 122536 0.66 0.940379
Target:  5'- cGGUCGaGCGACAgcaggGCCaGCAUCa-- -3'
miRNA:   3'- aCCAGC-CGUUGUag---CGGcCGUAGcug -5'
15708 3' -56.6 NC_004065.1 + 74449 0.66 0.940379
Target:  5'- aGGUUcGCGACGgugCGCUGGagggcgguCAUCGGCu -3'
miRNA:   3'- aCCAGcCGUUGUa--GCGGCC--------GUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 25545 0.66 0.940379
Target:  5'- -----aGCGACAgacggCGUCGGCGUCGGCc -3'
miRNA:   3'- accagcCGUUGUa----GCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 77959 0.66 0.936202
Target:  5'- gGGaUCGGCGACAggaacacggggcccaCGCuCGGC-UCGAUc -3'
miRNA:   3'- aCC-AGCCGUUGUa--------------GCG-GCCGuAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 148582 0.66 0.935726
Target:  5'- aGGaCGGCGACAcCGUgGGCGaccuggCGGCc -3'
miRNA:   3'- aCCaGCCGUUGUaGCGgCCGUa-----GCUG- -5'
15708 3' -56.6 NC_004065.1 + 129255 0.66 0.935726
Target:  5'- cGGUUGGU---GUUGaaGGCAUUGACg -3'
miRNA:   3'- aCCAGCCGuugUAGCggCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 88643 0.66 0.935726
Target:  5'- cGGcUCGGCGACGgagggCGgUGGCGgugccgCGGCc -3'
miRNA:   3'- aCC-AGCCGUUGUa----GCgGCCGUa-----GCUG- -5'
15708 3' -56.6 NC_004065.1 + 191370 0.66 0.935726
Target:  5'- aGGUCGaCGACGguagggcgguuUCGUCGGCAggUCGGg -3'
miRNA:   3'- aCCAGCcGUUGU-----------AGCGGCCGU--AGCUg -5'
15708 3' -56.6 NC_004065.1 + 140412 0.66 0.930849
Target:  5'- cUGGUaucguugucgaCGGCGcCAUCGUCGGCccCGAa -3'
miRNA:   3'- -ACCA-----------GCCGUuGUAGCGGCCGuaGCUg -5'
15708 3' -56.6 NC_004065.1 + 116135 0.66 0.930849
Target:  5'- cUGGUCGGCGuccugCGgCGGC-UCGGg -3'
miRNA:   3'- -ACCAGCCGUugua-GCgGCCGuAGCUg -5'
15708 3' -56.6 NC_004065.1 + 80793 0.66 0.930849
Target:  5'- gGGUcaagaucaucuaCGGCGACAccgacaguguguUUGCggcuuucuaCGGCAUCGACa -3'
miRNA:   3'- aCCA------------GCCGUUGU------------AGCG---------GCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 78655 0.66 0.928326
Target:  5'- cGGUCGGCGGCGUC-CCguuccucucccuccgGGCuccuaaacauacuucUCGACg -3'
miRNA:   3'- aCCAGCCGUUGUAGcGG---------------CCGu--------------AGCUG- -5'
15708 3' -56.6 NC_004065.1 + 88864 0.66 0.925747
Target:  5'- cUGG-CGGC--CAUCGCCgagcucauggagGGCcgCGACg -3'
miRNA:   3'- -ACCaGCCGuuGUAGCGG------------CCGuaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 164652 0.66 0.925747
Target:  5'- cGGgucgCGGCGcGCGUCGCCaGGUcgAUcCGACc -3'
miRNA:   3'- aCCa---GCCGU-UGUAGCGG-CCG--UA-GCUG- -5'
15708 3' -56.6 NC_004065.1 + 56541 0.66 0.925747
Target:  5'- gUGG-CGGCGACAcCGCaGGCGcUGAUg -3'
miRNA:   3'- -ACCaGCCGUUGUaGCGgCCGUaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.