miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15708 3' -56.6 NC_004065.1 + 7162 0.66 0.949017
Target:  5'- aGGUCcGUAGC--CGUCGGUcuGUCGACa -3'
miRNA:   3'- aCCAGcCGUUGuaGCGGCCG--UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 7379 0.67 0.909089
Target:  5'- cGGUCGuCu-CGUCGUCGGUguuggaAUCGACa -3'
miRNA:   3'- aCCAGCcGuuGUAGCGGCCG------UAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 7586 0.67 0.896871
Target:  5'- -uGUUGGCAgauACAUCaGCCGGCG--GACg -3'
miRNA:   3'- acCAGCCGU---UGUAG-CGGCCGUagCUG- -5'
15708 3' -56.6 NC_004065.1 + 15605 0.72 0.69518
Target:  5'- aGGUCGGUGAaugucgCGCCGGaUGUUGACg -3'
miRNA:   3'- aCCAGCCGUUgua---GCGGCC-GUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 18075 0.69 0.809992
Target:  5'- aUGG-CGGCAGCgaccgccgcagccucGUgGCCGGCAUCu-- -3'
miRNA:   3'- -ACCaGCCGUUG---------------UAgCGGCCGUAGcug -5'
15708 3' -56.6 NC_004065.1 + 18767 0.69 0.831617
Target:  5'- gGGuUCGGCucugAGgGUCGUCGGUggCGACg -3'
miRNA:   3'- aCC-AGCCG----UUgUAGCGGCCGuaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 18809 0.67 0.914866
Target:  5'- aGGagucgcCGGaGAgGUCGUCGGCGUCGAg -3'
miRNA:   3'- aCCa-----GCCgUUgUAGCGGCCGUAGCUg -5'
15708 3' -56.6 NC_004065.1 + 19395 0.76 0.436128
Target:  5'- gGGUaguaUGGgGACGUuaccCGCCGGCGUCGGCg -3'
miRNA:   3'- aCCA----GCCgUUGUA----GCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 19407 0.73 0.596194
Target:  5'- cGGcaUCGGCAGCAUCGUCGuCGuccUCGGCa -3'
miRNA:   3'- aCC--AGCCGUUGUAGCGGCcGU---AGCUG- -5'
15708 3' -56.6 NC_004065.1 + 21954 0.67 0.896871
Target:  5'- aUGG-CGGCcagggcCGUCGUCGGCAg-GACg -3'
miRNA:   3'- -ACCaGCCGuu----GUAGCGGCCGUagCUG- -5'
15708 3' -56.6 NC_004065.1 + 22925 0.8 0.269257
Target:  5'- cGGUCGGCGGuuccgucucgucguCAgauugUCGCCGGCAUCGAg -3'
miRNA:   3'- aCCAGCCGUU--------------GU-----AGCGGCCGUAGCUg -5'
15708 3' -56.6 NC_004065.1 + 24533 0.66 0.925747
Target:  5'- cGG-CGGCAGCGaCGaCGGCAgcggaGACg -3'
miRNA:   3'- aCCaGCCGUUGUaGCgGCCGUag---CUG- -5'
15708 3' -56.6 NC_004065.1 + 24847 0.69 0.806571
Target:  5'- cGG-CGGCGGCggUGgCGGCGaCGACa -3'
miRNA:   3'- aCCaGCCGUUGuaGCgGCCGUaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 24857 0.71 0.743293
Target:  5'- -uGUUGGCGGCGaCGgCGGCcUCGACg -3'
miRNA:   3'- acCAGCCGUUGUaGCgGCCGuAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 25470 0.67 0.920419
Target:  5'- ----gGGCu---UCGUCGGCAUCGGCg -3'
miRNA:   3'- accagCCGuuguAGCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 25545 0.66 0.940379
Target:  5'- -----aGCGACAgacggCGUCGGCGUCGGCc -3'
miRNA:   3'- accagcCGUUGUa----GCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 25770 0.68 0.883784
Target:  5'- -cGUCGGCGACcuugaGUcCGCUGGCAUagcCGAUg -3'
miRNA:   3'- acCAGCCGUUG-----UA-GCGGCCGUA---GCUG- -5'
15708 3' -56.6 NC_004065.1 + 27532 0.69 0.831617
Target:  5'- -cGUCGGCGGCGcCGCCGGUcucuUCGuCc -3'
miRNA:   3'- acCAGCCGUUGUaGCGGCCGu---AGCuG- -5'
15708 3' -56.6 NC_004065.1 + 29769 0.73 0.596194
Target:  5'- cGGaCGGCuGCAgCGCCGGCGUCa-- -3'
miRNA:   3'- aCCaGCCGuUGUaGCGGCCGUAGcug -5'
15708 3' -56.6 NC_004065.1 + 29985 0.67 0.914866
Target:  5'- cGG-CGGCGGCAgugguaUCGCCagaGGCugcgCGACc -3'
miRNA:   3'- aCCaGCCGUUGU------AGCGG---CCGua--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.