miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15708 3' -56.6 NC_004065.1 + 197938 0.72 0.685375
Target:  5'- cGGUCGGCGA-GUCGaagCGGUcgCGGCa -3'
miRNA:   3'- aCCAGCCGUUgUAGCg--GCCGuaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 163283 0.73 0.616017
Target:  5'- cGGUC-GCGACGcCGCCGGgGUcCGACg -3'
miRNA:   3'- aCCAGcCGUUGUaGCGGCCgUA-GCUG- -5'
15708 3' -56.6 NC_004065.1 + 35585 0.73 0.625949
Target:  5'- cGGaaUCGGUGGCGUCGgCGGUGUCGGu -3'
miRNA:   3'- aCC--AGCCGUUGUAGCgGCCGUAGCUg -5'
15708 3' -56.6 NC_004065.1 + 229296 0.73 0.635885
Target:  5'- cUGGUCGcGUuGCGUCaCCGGCGUCG-Cg -3'
miRNA:   3'- -ACCAGC-CGuUGUAGcGGCCGUAGCuG- -5'
15708 3' -56.6 NC_004065.1 + 85786 0.73 0.635885
Target:  5'- -aGUCGGCGACcgaggCGCgagaacCGGCGUCGGCg -3'
miRNA:   3'- acCAGCCGUUGua---GCG------GCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 168553 0.72 0.665648
Target:  5'- gUGGU-GGCAGCggCGgCGGCggCGACa -3'
miRNA:   3'- -ACCAgCCGUUGuaGCgGCCGuaGCUG- -5'
15708 3' -56.6 NC_004065.1 + 59969 0.72 0.675528
Target:  5'- aGGUUGGCGGCuUCGUCGGC--CGAg -3'
miRNA:   3'- aCCAGCCGUUGuAGCGGCCGuaGCUg -5'
15708 3' -56.6 NC_004065.1 + 34101 0.72 0.685375
Target:  5'- aGGugaUCGGCGAUAaagCGCCGGCAgaaCGAg -3'
miRNA:   3'- aCC---AGCCGUUGUa--GCGGCCGUa--GCUg -5'
15708 3' -56.6 NC_004065.1 + 41475 0.72 0.685375
Target:  5'- aUGGUaaGCAGCGUgCGCCggGGCGUCGGg -3'
miRNA:   3'- -ACCAgcCGUUGUA-GCGG--CCGUAGCUg -5'
15708 3' -56.6 NC_004065.1 + 81906 0.73 0.610063
Target:  5'- aGGUCGGCGuggACGUCGuaGGCGUggugcaccaucucucCGACg -3'
miRNA:   3'- aCCAGCCGU---UGUAGCggCCGUA---------------GCUG- -5'
15708 3' -56.6 NC_004065.1 + 120562 0.74 0.590264
Target:  5'- cGGUCGGCGcgaGCGggcgggaccuccggCGCCGGUcUCGGCc -3'
miRNA:   3'- aCCAGCCGU---UGUa-------------GCGGCCGuAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 166134 0.74 0.576471
Target:  5'- -cGUCGGCAgagACGUcggCGCCGGCGgcagCGGCg -3'
miRNA:   3'- acCAGCCGU---UGUA---GCGGCCGUa---GCUG- -5'
15708 3' -56.6 NC_004065.1 + 71759 0.81 0.235804
Target:  5'- cGGUCGGUGACcgUGuuGGCGUCGAUc -3'
miRNA:   3'- aCCAGCCGUUGuaGCggCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 22925 0.8 0.269257
Target:  5'- cGGUCGGCGGuuccgucucgucguCAgauugUCGCCGGCAUCGAg -3'
miRNA:   3'- aCCAGCCGUU--------------GU-----AGCGGCCGUAGCUg -5'
15708 3' -56.6 NC_004065.1 + 170290 0.79 0.321798
Target:  5'- cGGUCGGCAcCAUCGCCGccgggucgguaaaCAUCGGCa -3'
miRNA:   3'- aCCAGCCGUuGUAGCGGCc------------GUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 19395 0.76 0.436128
Target:  5'- gGGUaguaUGGgGACGUuaccCGCCGGCGUCGGCg -3'
miRNA:   3'- aCCA----GCCgUUGUA----GCGGCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 152306 0.76 0.453778
Target:  5'- cGG-CGGCGGCggUGCCGGCGggGACg -3'
miRNA:   3'- aCCaGCCGUUGuaGCGGCCGUagCUG- -5'
15708 3' -56.6 NC_004065.1 + 32938 0.76 0.462747
Target:  5'- cGGUCGGCucccgcGCGgauGCgGGCGUCGACg -3'
miRNA:   3'- aCCAGCCGu-----UGUag-CGgCCGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 127929 0.75 0.480959
Target:  5'- cGGUcCGGC--CAUCGCCGcccGCGUCGGCg -3'
miRNA:   3'- aCCA-GCCGuuGUAGCGGC---CGUAGCUG- -5'
15708 3' -56.6 NC_004065.1 + 136780 0.74 0.566662
Target:  5'- cGGUCGGC-ACGUCGaucccaCCGGCcgcuucGUCGGCu -3'
miRNA:   3'- aCCAGCCGuUGUAGC------GGCCG------UAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.