miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15708 5' -57.2 NC_004065.1 + 43734 0.66 0.930849
Target:  5'- gUAUCgGCGGCGccgaggacacguGCUGCGGCggaugaugugGCUGCg- -3'
miRNA:   3'- gAUAG-CGCCGC------------UGAUGCCG----------UGGCGau -5'
15708 5' -57.2 NC_004065.1 + 97063 0.66 0.930849
Target:  5'- gUGUgGUGGCGauggugauuGCUGCuGGUGCUGCUGc -3'
miRNA:   3'- gAUAgCGCCGC---------UGAUG-CCGUGGCGAU- -5'
15708 5' -57.2 NC_004065.1 + 70564 0.66 0.930849
Target:  5'- cCUGUaCGCGGcCGugUggGgGGUGCUGCUGa -3'
miRNA:   3'- -GAUA-GCGCC-GCugA--UgCCGUGGCGAU- -5'
15708 5' -57.2 NC_004065.1 + 38169 0.66 0.930849
Target:  5'- ---aCGCGGCGAUccgcgccaGCGGCAUCaGCUu -3'
miRNA:   3'- gauaGCGCCGCUGa-------UGCCGUGG-CGAu -5'
15708 5' -57.2 NC_004065.1 + 177792 0.66 0.930849
Target:  5'- ----gGUGGgGugUugGGCGCUGUUGg -3'
miRNA:   3'- gauagCGCCgCugAugCCGUGGCGAU- -5'
15708 5' -57.2 NC_004065.1 + 71338 0.66 0.930349
Target:  5'- -cAUCGCGGCG-CUGgagaaguacaucgUGGCgcACCGCa- -3'
miRNA:   3'- gaUAGCGCCGCuGAU-------------GCCG--UGGCGau -5'
15708 5' -57.2 NC_004065.1 + 1161 0.66 0.927301
Target:  5'- ---cCGCGGUGGuccccauugugucguCGGCGCCGCUGc -3'
miRNA:   3'- gauaGCGCCGCUgau------------GCCGUGGCGAU- -5'
15708 5' -57.2 NC_004065.1 + 29980 0.66 0.925747
Target:  5'- ----gGCGGCGGCgGCGGCAgUGgUAu -3'
miRNA:   3'- gauagCGCCGCUGaUGCCGUgGCgAU- -5'
15708 5' -57.2 NC_004065.1 + 76736 0.66 0.925747
Target:  5'- --cUCgGCGGgGACgggcGCGGCGCCGg-- -3'
miRNA:   3'- gauAG-CGCCgCUGa---UGCCGUGGCgau -5'
15708 5' -57.2 NC_004065.1 + 138555 0.66 0.925747
Target:  5'- ----aGCGGCGGCggacugACGGCGacggugccguCCGCUc -3'
miRNA:   3'- gauagCGCCGCUGa-----UGCCGU----------GGCGAu -5'
15708 5' -57.2 NC_004065.1 + 30869 0.66 0.925747
Target:  5'- cCUGUCGaCGGCGGgUuCGaGCGcCCGCa- -3'
miRNA:   3'- -GAUAGC-GCCGCUgAuGC-CGU-GGCGau -5'
15708 5' -57.2 NC_004065.1 + 142474 0.66 0.925747
Target:  5'- --uUCGCGGgGACagGCGGCuaaccCCGuCUGg -3'
miRNA:   3'- gauAGCGCCgCUGa-UGCCGu----GGC-GAU- -5'
15708 5' -57.2 NC_004065.1 + 128753 0.66 0.925747
Target:  5'- -cGUCgGCaGCGGCaGCGGCAgCGUUGa -3'
miRNA:   3'- gaUAG-CGcCGCUGaUGCCGUgGCGAU- -5'
15708 5' -57.2 NC_004065.1 + 138112 0.66 0.925747
Target:  5'- gCUGUCgGCGGCGAUcgacGCGGUcaaguuucaGCCGUg- -3'
miRNA:   3'- -GAUAG-CGCCGCUGa---UGCCG---------UGGCGau -5'
15708 5' -57.2 NC_004065.1 + 150936 0.66 0.925747
Target:  5'- ---gCGCGGagGACgaggGCGGCGCgGCg- -3'
miRNA:   3'- gauaGCGCCg-CUGa---UGCCGUGgCGau -5'
15708 5' -57.2 NC_004065.1 + 21742 0.66 0.920419
Target:  5'- ---gUGCGGCaACaGCGGCACCuGCg- -3'
miRNA:   3'- gauaGCGCCGcUGaUGCCGUGG-CGau -5'
15708 5' -57.2 NC_004065.1 + 91205 0.66 0.920419
Target:  5'- ---gCGUGcGCGGCauCGGCGCCGCc- -3'
miRNA:   3'- gauaGCGC-CGCUGauGCCGUGGCGau -5'
15708 5' -57.2 NC_004065.1 + 164099 0.66 0.920419
Target:  5'- -gAUCGUGGUGggucuucuggcGCUugGGCucccccCCGCUGc -3'
miRNA:   3'- gaUAGCGCCGC-----------UGAugCCGu-----GGCGAU- -5'
15708 5' -57.2 NC_004065.1 + 34262 0.66 0.920419
Target:  5'- -gGUCaGC-GCGAC-ACGGCGCCGUc- -3'
miRNA:   3'- gaUAG-CGcCGCUGaUGCCGUGGCGau -5'
15708 5' -57.2 NC_004065.1 + 62382 0.66 0.918224
Target:  5'- cCUGUaCGCGGCGACgaugccgccucccGCGaGCguaacgaccGCCGCUGc -3'
miRNA:   3'- -GAUA-GCGCCGCUGa------------UGC-CG---------UGGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.