miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 3' -51.9 NC_004065.1 + 205401 0.66 0.996582
Target:  5'- cGCGCCUccUCAACU-GGcGCu-UUCGCa -3'
miRNA:   3'- uUGCGGA--AGUUGAgCCaCGcuAAGCG- -5'
15709 3' -51.9 NC_004065.1 + 217377 0.66 0.996582
Target:  5'- ---aUCUcCGGCU-GGUGCGGUUCGCc -3'
miRNA:   3'- uugcGGAaGUUGAgCCACGCUAAGCG- -5'
15709 3' -51.9 NC_004065.1 + 197073 0.66 0.996002
Target:  5'- cGACGCCuUUCAGuucCUCGuaGCGGcUCGCg -3'
miRNA:   3'- -UUGCGG-AAGUU---GAGCcaCGCUaAGCG- -5'
15709 3' -51.9 NC_004065.1 + 165750 0.66 0.996002
Target:  5'- cGCGCCUUCcaggAACUCGGacaGCGucuguaGCa -3'
miRNA:   3'- uUGCGGAAG----UUGAGCCa--CGCuaag--CG- -5'
15709 3' -51.9 NC_004065.1 + 120332 0.66 0.996002
Target:  5'- -uCGCCgcgCGAuCUCGGcgGCGAUgUCGUc -3'
miRNA:   3'- uuGCGGaa-GUU-GAGCCa-CGCUA-AGCG- -5'
15709 3' -51.9 NC_004065.1 + 83026 0.66 0.995345
Target:  5'- uGCGCUUUC---UCGGUGCG-UUgGCu -3'
miRNA:   3'- uUGCGGAAGuugAGCCACGCuAAgCG- -5'
15709 3' -51.9 NC_004065.1 + 163908 0.66 0.995345
Target:  5'- cGCGCCagCGcCUCGGUGaug-UCGCc -3'
miRNA:   3'- uUGCGGaaGUuGAGCCACgcuaAGCG- -5'
15709 3' -51.9 NC_004065.1 + 120397 0.66 0.994602
Target:  5'- gGACGCCcUCGACggUGGUGgGcacCGCg -3'
miRNA:   3'- -UUGCGGaAGUUGa-GCCACgCuaaGCG- -5'
15709 3' -51.9 NC_004065.1 + 7952 0.66 0.994112
Target:  5'- gAACGCCUUCGuacccgacggaggguGC-CGGUGCGGacCGa -3'
miRNA:   3'- -UUGCGGAAGU---------------UGaGCCACGCUaaGCg -5'
15709 3' -51.9 NC_004065.1 + 103380 0.66 0.993766
Target:  5'- cGACGCCgUCAACaCGGUGUugcgUGCg -3'
miRNA:   3'- -UUGCGGaAGUUGaGCCACGcuaaGCG- -5'
15709 3' -51.9 NC_004065.1 + 43449 0.66 0.993766
Target:  5'- gAGCGCCgcCGucCUCGGUGUaGAcguugUCGCa -3'
miRNA:   3'- -UUGCGGaaGUu-GAGCCACG-CUa----AGCG- -5'
15709 3' -51.9 NC_004065.1 + 170459 0.67 0.993217
Target:  5'- aGGCGCCUUCGcugccgccgcagaccGCUCGGcgaGCucUUCGUc -3'
miRNA:   3'- -UUGCGGAAGU---------------UGAGCCa--CGcuAAGCG- -5'
15709 3' -51.9 NC_004065.1 + 202590 0.67 0.991783
Target:  5'- aGGCGCCgaCAACUCGcGgGCGGacaUCGUg -3'
miRNA:   3'- -UUGCGGaaGUUGAGC-CaCGCUa--AGCG- -5'
15709 3' -51.9 NC_004065.1 + 197176 0.67 0.991783
Target:  5'- gGACGCCagcuccccgcggUUCGACU-GGUgGCGGUagaagUCGCg -3'
miRNA:   3'- -UUGCGG------------AAGUUGAgCCA-CGCUA-----AGCG- -5'
15709 3' -51.9 NC_004065.1 + 113044 0.67 0.991783
Target:  5'- uGCGCCag-AACUCGG-GCGAgaucUUGCg -3'
miRNA:   3'- uUGCGGaagUUGAGCCaCGCUa---AGCG- -5'
15709 3' -51.9 NC_004065.1 + 142594 0.67 0.991783
Target:  5'- -uCGCCacagCAGCgaagCGGUGCGcUUCGg -3'
miRNA:   3'- uuGCGGaa--GUUGa---GCCACGCuAAGCg -5'
15709 3' -51.9 NC_004065.1 + 4868 0.67 0.991783
Target:  5'- -cCGCCcUCGGCUCGGUcacccaggaggaGCGuc-CGCg -3'
miRNA:   3'- uuGCGGaAGUUGAGCCA------------CGCuaaGCG- -5'
15709 3' -51.9 NC_004065.1 + 59708 0.67 0.99062
Target:  5'- gGGCGCCgagCGGCcgCGGcgcacgGCGAccgUCGCg -3'
miRNA:   3'- -UUGCGGaa-GUUGa-GCCa-----CGCUa--AGCG- -5'
15709 3' -51.9 NC_004065.1 + 169362 0.67 0.99062
Target:  5'- --gGCCgucugUCAGCUCGacgcGUGCGuggCGCg -3'
miRNA:   3'- uugCGGa----AGUUGAGC----CACGCuaaGCG- -5'
15709 3' -51.9 NC_004065.1 + 134905 0.68 0.986343
Target:  5'- -uCGCCUUCAGCgUGGUGCugcaccucCGCg -3'
miRNA:   3'- uuGCGGAAGUUGaGCCACGcuaa----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.