miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 126722 0.66 0.802075
Target:  5'- -gGCGACCGCu--GAGCCuGCCGccGCGg -3'
miRNA:   3'- ugCGCUGGUGugcCUCGG-CGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 127509 0.66 0.802075
Target:  5'- cGCGCGucguccucugccGCCugcuCAUGGGccccGUCGCCGUGCc -3'
miRNA:   3'- -UGCGC------------UGGu---GUGCCU----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 99544 0.66 0.802075
Target:  5'- gGCGCucccgucucGCCGCgGCGGAcgGCCGUgGUGCGu -3'
miRNA:   3'- -UGCGc--------UGGUG-UGCCU--CGGCGgCACGU- -5'
15709 5' -61.3 NC_004065.1 + 122486 0.66 0.802075
Target:  5'- aGCGCacGACCcgcaGCugGGcGGUCGCCGcGCGc -3'
miRNA:   3'- -UGCG--CUGG----UGugCC-UCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 122481 0.66 0.802075
Target:  5'- cCGCGACCACAccuCGGAGaacaCGuuG-GCc -3'
miRNA:   3'- uGCGCUGGUGU---GCCUCg---GCggCaCGu -5'
15709 5' -61.3 NC_004065.1 + 39049 0.66 0.802075
Target:  5'- uCGUGACCccgcACACGGAGaaggcauucaUCGCCugGUGCGc -3'
miRNA:   3'- uGCGCUGG----UGUGCCUC----------GGCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 30386 0.66 0.802075
Target:  5'- gACGUGACCugGCGGAucGCgGacaaCGUGg- -3'
miRNA:   3'- -UGCGCUGGugUGCCU--CGgCg---GCACgu -5'
15709 5' -61.3 NC_004065.1 + 203083 0.66 0.793626
Target:  5'- cCGCGGCCGC-CGGAGCgGUCu---- -3'
miRNA:   3'- uGCGCUGGUGuGCCUCGgCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 66604 0.66 0.793626
Target:  5'- -gGCGGCCAcCGCGGcGuuGCCGacGCu -3'
miRNA:   3'- ugCGCUGGU-GUGCCuCggCGGCa-CGu -5'
15709 5' -61.3 NC_004065.1 + 5653 0.66 0.793626
Target:  5'- aACGCcGCCACAUGGAcauccuGCaCaCCGUGCu -3'
miRNA:   3'- -UGCGcUGGUGUGCCU------CG-GcGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 120147 0.66 0.793626
Target:  5'- gACGCGGCC--GCGGcGaCGCCGgugGCAc -3'
miRNA:   3'- -UGCGCUGGugUGCCuCgGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 21991 0.66 0.793626
Target:  5'- cCGCcacGGCCACgccgACGGucaucGCCGCCG-GCAc -3'
miRNA:   3'- uGCG---CUGGUG----UGCCu----CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 170281 0.66 0.793626
Target:  5'- --uCGGCCACGCGGucggcaccaucGCCGCCGggucgGUAa -3'
miRNA:   3'- ugcGCUGGUGUGCCu----------CGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 35945 0.66 0.793626
Target:  5'- uCGCGGCCGCAggucguCGGAcucgcGCCGCUGcuccUGCc -3'
miRNA:   3'- uGCGCUGGUGU------GCCU-----CGGCGGC----ACGu -5'
15709 5' -61.3 NC_004065.1 + 33809 0.66 0.792774
Target:  5'- gACGUggGACgACGCGGAcaaGCuggccaucaaccaCGCCGUGCGc -3'
miRNA:   3'- -UGCG--CUGgUGUGCCU---CG-------------GCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 37926 0.66 0.791921
Target:  5'- cCGCGAuccucguguugguCCACAucucguucUGGAucucgucGCCGCCGUGUAa -3'
miRNA:   3'- uGCGCU-------------GGUGU--------GCCU-------CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 130172 0.66 0.788495
Target:  5'- cCGCGACC-C-CGGcGCCaucuggugcgacgggGCCGUGCu -3'
miRNA:   3'- uGCGCUGGuGuGCCuCGG---------------CGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 109595 0.66 0.78505
Target:  5'- gGCGUaucaGGCCGCGCucgacccccGGGCCGCgGUGCc -3'
miRNA:   3'- -UGCG----CUGGUGUGc--------CUCGGCGgCACGu -5'
15709 5' -61.3 NC_004065.1 + 195115 0.66 0.78505
Target:  5'- cCGCGACCGCACcGGGCUGUCu---- -3'
miRNA:   3'- uGCGCUGGUGUGcCUCGGCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 65461 0.66 0.78505
Target:  5'- aGCGCGAagCGguCGGcGCCGCCGccgGCu -3'
miRNA:   3'- -UGCGCUg-GUguGCCuCGGCGGCa--CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.