miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 68330 0.66 0.78505
Target:  5'- uCGUGGCUGCG-GGAGCUGCUGcaGCAg -3'
miRNA:   3'- uGCGCUGGUGUgCCUCGGCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 91664 0.66 0.758621
Target:  5'- gGCGCGAUgACGacgGGGGUCGCCuuGUcGCAg -3'
miRNA:   3'- -UGCGCUGgUGUg--CCUCGGCGG--CA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 163090 0.66 0.76754
Target:  5'- gGCGagGGCCGCACcgagaacugGGGGCCcggcugGCUGUGCGc -3'
miRNA:   3'- -UGCg-CUGGUGUG---------CCUCGG------CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 125623 0.66 0.776352
Target:  5'- uGCGCG-CCugguagaaguGCAC-GAGCCGCCGcgugGCGu -3'
miRNA:   3'- -UGCGCuGG----------UGUGcCUCGGCGGCa---CGU- -5'
15709 5' -61.3 NC_004065.1 + 64433 0.66 0.757724
Target:  5'- uCGCGGCCACGCaGAcGCugaggaacugucgCGCCGUGg- -3'
miRNA:   3'- uGCGCUGGUGUGcCU-CG-------------GCGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 115039 0.66 0.776352
Target:  5'- cGCGCGGCCGC-CaGGGCCGagG-GCAa -3'
miRNA:   3'- -UGCGCUGGUGuGcCUCGGCggCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 166150 0.66 0.776352
Target:  5'- gGCGcCGGCgGCAgCGGcGCCgacGUCGUGCAc -3'
miRNA:   3'- -UGC-GCUGgUGU-GCCuCGG---CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 110295 0.66 0.776352
Target:  5'- cGCGCGACCcggccguCACGGucucgcagcucuGGCCGgggcUCGUGCu -3'
miRNA:   3'- -UGCGCUGGu------GUGCC------------UCGGC----GGCACGu -5'
15709 5' -61.3 NC_004065.1 + 55905 0.66 0.78505
Target:  5'- cCGC-ACCucuCACGGAGUccgCGCCG-GCAg -3'
miRNA:   3'- uGCGcUGGu--GUGCCUCG---GCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 91180 0.66 0.758621
Target:  5'- -gGCGACgGcCGCGGAagcGCCGUcggCGUGCGc -3'
miRNA:   3'- ugCGCUGgU-GUGCCU---CGGCG---GCACGU- -5'
15709 5' -61.3 NC_004065.1 + 216013 0.66 0.758621
Target:  5'- gAUGUGACCACACacguGGucaAGCCgGUCGUGUu -3'
miRNA:   3'- -UGCGCUGGUGUG----CC---UCGG-CGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 135062 0.66 0.758621
Target:  5'- uACGCGGCagcCGCGGAGCgGgCCccGCAg -3'
miRNA:   3'- -UGCGCUGgu-GUGCCUCGgC-GGcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 109595 0.66 0.78505
Target:  5'- gGCGUaucaGGCCGCGCucgacccccGGGCCGCgGUGCc -3'
miRNA:   3'- -UGCG----CUGGUGUGc--------CUCGGCGgCACGu -5'
15709 5' -61.3 NC_004065.1 + 21991 0.66 0.793626
Target:  5'- cCGCcacGGCCACgccgACGGucaucGCCGCCG-GCAc -3'
miRNA:   3'- uGCG---CUGGUG----UGCCu----CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 130172 0.66 0.788495
Target:  5'- cCGCGACC-C-CGGcGCCaucuggugcgacgggGCCGUGCu -3'
miRNA:   3'- uGCGCUGGuGuGCCuCGG---------------CGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 126722 0.66 0.802075
Target:  5'- -gGCGACCGCu--GAGCCuGCCGccGCGg -3'
miRNA:   3'- ugCGCUGGUGugcCUCGG-CGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 170281 0.66 0.793626
Target:  5'- --uCGGCCACGCGGucggcaccaucGCCGCCGggucgGUAa -3'
miRNA:   3'- ugcGCUGGUGUGCCu----------CGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 122486 0.66 0.802075
Target:  5'- aGCGCacGACCcgcaGCugGGcGGUCGCCGcGCGc -3'
miRNA:   3'- -UGCG--CUGG----UGugCC-UCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 35945 0.66 0.793626
Target:  5'- uCGCGGCCGCAggucguCGGAcucgcGCCGCUGcuccUGCc -3'
miRNA:   3'- uGCGCUGGUGU------GCCU-----CGGCGGC----ACGu -5'
15709 5' -61.3 NC_004065.1 + 99544 0.66 0.802075
Target:  5'- gGCGCucccgucucGCCGCgGCGGAcgGCCGUgGUGCGu -3'
miRNA:   3'- -UGCGc--------UGGUG-UGCCU--CGGCGgCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.