miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 120147 0.66 0.793626
Target:  5'- gACGCGGCC--GCGGcGaCGCCGgugGCAc -3'
miRNA:   3'- -UGCGCUGGugUGCCuCgGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 95151 0.66 0.76754
Target:  5'- -aGCGACaguucuCGuCGccGCCGCCGUGCAg -3'
miRNA:   3'- ugCGCUGgu----GU-GCcuCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 122486 0.66 0.802075
Target:  5'- aGCGCacGACCcgcaGCugGGcGGUCGCCGcGCGc -3'
miRNA:   3'- -UGCG--CUGG----UGugCC-UCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 21991 0.66 0.793626
Target:  5'- cCGCcacGGCCACgccgACGGucaucGCCGCCG-GCAc -3'
miRNA:   3'- uGCG---CUGGUG----UGCCu----CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 99544 0.66 0.802075
Target:  5'- gGCGCucccgucucGCCGCgGCGGAcgGCCGUgGUGCGu -3'
miRNA:   3'- -UGCGc--------UGGUG-UGCCU--CGGCGgCACGU- -5'
15709 5' -61.3 NC_004065.1 + 170281 0.66 0.793626
Target:  5'- --uCGGCCACGCGGucggcaccaucGCCGCCGggucgGUAa -3'
miRNA:   3'- ugcGCUGGUGUGCCu----------CGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 35945 0.66 0.793626
Target:  5'- uCGCGGCCGCAggucguCGGAcucgcGCCGCUGcuccUGCc -3'
miRNA:   3'- uGCGCUGGUGU------GCCU-----CGGCGGC----ACGu -5'
15709 5' -61.3 NC_004065.1 + 194296 0.66 0.78505
Target:  5'- cCGCGAUCugGCGccGAGUCGCCa-GCGg -3'
miRNA:   3'- uGCGCUGGugUGC--CUCGGCGGcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 130172 0.66 0.788495
Target:  5'- cCGCGACC-C-CGGcGCCaucuggugcgacgggGCCGUGCu -3'
miRNA:   3'- uGCGCUGGuGuGCCuCGG---------------CGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 109595 0.66 0.78505
Target:  5'- gGCGUaucaGGCCGCGCucgacccccGGGCCGCgGUGCc -3'
miRNA:   3'- -UGCG----CUGGUGUGc--------CUCGGCGgCACGu -5'
15709 5' -61.3 NC_004065.1 + 33809 0.66 0.792774
Target:  5'- gACGUggGACgACGCGGAcaaGCuggccaucaaccaCGCCGUGCGc -3'
miRNA:   3'- -UGCG--CUGgUGUGCCU---CG-------------GCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 188510 0.66 0.776352
Target:  5'- cCGCGACuCugGCGGGaCCGcCCGcGCGc -3'
miRNA:   3'- uGCGCUG-GugUGCCUcGGC-GGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 114867 0.66 0.758621
Target:  5'- -gGCGACg--ACGGuGCCGCCGgccgGCGg -3'
miRNA:   3'- ugCGCUGgugUGCCuCGGCGGCa---CGU- -5'
15709 5' -61.3 NC_004065.1 + 37926 0.66 0.791921
Target:  5'- cCGCGAuccucguguugguCCACAucucguucUGGAucucgucGCCGCCGUGUAa -3'
miRNA:   3'- uGCGCU-------------GGUGU--------GCCU-------CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 96035 0.66 0.78505
Target:  5'- cCGCGugCguggGCACGGgccccGGCCGCCGauauagGCu -3'
miRNA:   3'- uGCGCugG----UGUGCC-----UCGGCGGCa-----CGu -5'
15709 5' -61.3 NC_004065.1 + 127509 0.66 0.802075
Target:  5'- cGCGCGucguccucugccGCCugcuCAUGGGccccGUCGCCGUGCc -3'
miRNA:   3'- -UGCGC------------UGGu---GUGCCU----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 65461 0.66 0.78505
Target:  5'- aGCGCGAagCGguCGGcGCCGCCGccgGCu -3'
miRNA:   3'- -UGCGCUg-GUguGCCuCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 187306 0.66 0.78505
Target:  5'- cUGCGAUCACugGGGcggaggagcGCuCGCCGaccucUGCAg -3'
miRNA:   3'- uGCGCUGGUGugCCU---------CG-GCGGC-----ACGU- -5'
15709 5' -61.3 NC_004065.1 + 195115 0.66 0.78505
Target:  5'- cCGCGACCGCACcGGGCUGUCu---- -3'
miRNA:   3'- uGCGCUGGUGUGcCUCGGCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 131917 0.66 0.776352
Target:  5'- cCGCGACUACACGacGGGUUccuuggGCCuGUGCAu -3'
miRNA:   3'- uGCGCUGGUGUGC--CUCGG------CGG-CACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.