Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 115039 | 0.66 | 0.776352 |
Target: 5'- cGCGCGGCCGC-CaGGGCCGagG-GCAa -3' miRNA: 3'- -UGCGCUGGUGuGcCUCGGCggCaCGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 126722 | 0.66 | 0.802075 |
Target: 5'- -gGCGACCGCu--GAGCCuGCCGccGCGg -3' miRNA: 3'- ugCGCUGGUGugcCUCGG-CGGCa-CGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 31531 | 0.67 | 0.731304 |
Target: 5'- cGCGgGGCUaccccgGCAUGGAGCUGCUGgugGUg -3' miRNA: 3'- -UGCgCUGG------UGUGCCUCGGCGGCa--CGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 129614 | 0.67 | 0.722036 |
Target: 5'- uGCGCGGUCAgCGCGGAGaacuggacCCGCCG-GCu -3' miRNA: 3'- -UGCGCUGGU-GUGCCUC--------GGCGGCaCGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 8738 | 0.67 | 0.740495 |
Target: 5'- aACGUGACgAC-CGGAgGCCGUgGUGgCGg -3' miRNA: 3'- -UGCGCUGgUGuGCCU-CGGCGgCAC-GU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 68166 | 0.67 | 0.73958 |
Target: 5'- uCGCGGCgGCgcgcgcgACGGAGCUGUCG-GCc -3' miRNA: 3'- uGCGCUGgUG-------UGCCUCGGCGGCaCGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 207991 | 0.67 | 0.719242 |
Target: 5'- cCGCGGCCuGCcCGGGGCCguggccggguuaguGCCGgcgGCGa -3' miRNA: 3'- uGCGCUGG-UGuGCCUCGG--------------CGGCa--CGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 58619 | 0.67 | 0.740495 |
Target: 5'- gACGCG--CGCgGCGGAGUCGCCGgucucGCGg -3' miRNA: 3'- -UGCGCugGUG-UGCCUCGGCGGCa----CGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 30074 | 0.67 | 0.722036 |
Target: 5'- gACGgGACCGCcgugGCGGAGCgcgCGCUGaUGUg -3' miRNA: 3'- -UGCgCUGGUG----UGCCUCG---GCGGC-ACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 67589 | 0.67 | 0.740495 |
Target: 5'- gACGCuGAucUCGCcguCGGAGCUGCUgGUGCAg -3' miRNA: 3'- -UGCG-CU--GGUGu--GCCUCGGCGG-CACGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 8266 | 0.67 | 0.728531 |
Target: 5'- cCGUGACCuuucugcucaucggACugauCGGGGCCGCgGUGUu -3' miRNA: 3'- uGCGCUGG--------------UGu---GCCUCGGCGgCACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 77742 | 0.67 | 0.749604 |
Target: 5'- uGCGCaacGCCACgaccACGGuguGCCuGCUGUGCGa -3' miRNA: 3'- -UGCGc--UGGUG----UGCCu--CGG-CGGCACGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 201022 | 0.67 | 0.738664 |
Target: 5'- cCGCGugCGCGCGGcgccucgccaccGCCGCCGg--- -3' miRNA: 3'- uGCGCugGUGUGCCu-----------CGGCGGCacgu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 99850 | 0.67 | 0.703304 |
Target: 5'- -aGCGuCUGCGCcccGAucGCCGCCGUGCGa -3' miRNA: 3'- ugCGCuGGUGUGc--CU--CGGCGGCACGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 126266 | 0.68 | 0.693854 |
Target: 5'- uGCGCGACgGuC-CGGAGgccCCGCCGcGCGa -3' miRNA: 3'- -UGCGCUGgU-GuGCCUC---GGCGGCaCGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 38455 | 0.68 | 0.683408 |
Target: 5'- cGCGCGccgaucACCGCACGcgugcggaagaguGAGCCGCCcuUGCu -3' miRNA: 3'- -UGCGC------UGGUGUGC-------------CUCGGCGGc-ACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 115202 | 0.68 | 0.684359 |
Target: 5'- cCGUGGCCGCcgcgACGGGGCauacCGCCGgGCu -3' miRNA: 3'- uGCGCUGGUG----UGCCUCG----GCGGCaCGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 105562 | 0.68 | 0.674826 |
Target: 5'- gGCGCaGCgGCACGGcgcGCCGUCG-GCGg -3' miRNA: 3'- -UGCGcUGgUGUGCCu--CGGCGGCaCGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 161368 | 0.68 | 0.684359 |
Target: 5'- uACGcCGACUGCGCGuacgccucGGCCGCCuGUGCc -3' miRNA: 3'- -UGC-GCUGGUGUGCc-------UCGGCGG-CACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 130048 | 0.68 | 0.674826 |
Target: 5'- gACGaCGACC-CGCGGcccgAGCaCGCCGcgGCGg -3' miRNA: 3'- -UGC-GCUGGuGUGCC----UCG-GCGGCa-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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