miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 65624 0.68 0.655675
Target:  5'- cACGCuggaccaggagGACCugACGGAcccGCUGCCGcUGCc -3'
miRNA:   3'- -UGCG-----------CUGGugUGCCU---CGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 88412 0.68 0.655675
Target:  5'- cCGCcACCGCcggcaGCGGAgcccGCCGCCGUcGCGu -3'
miRNA:   3'- uGCGcUGGUG-----UGCCU----CGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 130048 0.68 0.674826
Target:  5'- gACGaCGACC-CGCGGcccgAGCaCGCCGcgGCGg -3'
miRNA:   3'- -UGC-GCUGGuGUGCC----UCG-GCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 105562 0.68 0.674826
Target:  5'- gGCGCaGCgGCACGGcgcGCCGUCG-GCGg -3'
miRNA:   3'- -UGCGcUGgUGUGCCu--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 161368 0.68 0.684359
Target:  5'- uACGcCGACUGCGCGuacgccucGGCCGCCuGUGCc -3'
miRNA:   3'- -UGC-GCUGGUGUGCc-------UCGGCGG-CACGu -5'
15709 5' -61.3 NC_004065.1 + 137930 0.68 0.684359
Target:  5'- gACGCG-CCggGCuCGGAGCUGCUG-GCGc -3'
miRNA:   3'- -UGCGCuGG--UGuGCCUCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 148133 0.68 0.684359
Target:  5'- cACGcCGACCucaGCACGc--CCGCCGUGCc -3'
miRNA:   3'- -UGC-GCUGG---UGUGCcucGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 71173 0.68 0.684359
Target:  5'- aACGUGACCGCGuCGGucAGCaGCC-UGCAc -3'
miRNA:   3'- -UGCGCUGGUGU-GCC--UCGgCGGcACGU- -5'
15709 5' -61.3 NC_004065.1 + 126266 0.68 0.693854
Target:  5'- uGCGCGACgGuC-CGGAGgccCCGCCGcGCGa -3'
miRNA:   3'- -UGCGCUGgU-GuGCCUC---GGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 115202 0.68 0.684359
Target:  5'- cCGUGGCCGCcgcgACGGGGCauacCGCCGgGCu -3'
miRNA:   3'- uGCGCUGGUG----UGCCUCG----GCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 199501 0.69 0.598037
Target:  5'- uACGUcucuucCCACGCGGcGGCCGCCacGUGCGc -3'
miRNA:   3'- -UGCGcu----GGUGUGCC-UCGGCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 87538 0.69 0.62684
Target:  5'- aGCGCGuGCCAgACGGgguuAGCCGCC-UGUc -3'
miRNA:   3'- -UGCGC-UGGUgUGCC----UCGGCGGcACGu -5'
15709 5' -61.3 NC_004065.1 + 169727 0.69 0.617227
Target:  5'- uCGCGACCugcACAuCGGGGUCGUCG-GCu -3'
miRNA:   3'- uGCGCUGG---UGU-GCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 104903 0.69 0.598037
Target:  5'- -gGCGACgGCGCGGuGgUGCCGgcgGCGu -3'
miRNA:   3'- ugCGCUGgUGUGCCuCgGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 164776 0.69 0.597079
Target:  5'- gGCGUgcagggaGAUCAUGCGGAuguagGUCGCCGUGCu -3'
miRNA:   3'- -UGCG-------CUGGUGUGCCU-----CGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 139856 0.69 0.597079
Target:  5'- -gGCGACgGCggaggcgGCGGAGCCGgCG-GCAg -3'
miRNA:   3'- ugCGCUGgUG-------UGCCUCGGCgGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 106350 0.69 0.588472
Target:  5'- gGCGCuGCUGCACGGgcAGCgCGCCacGUGCGa -3'
miRNA:   3'- -UGCGcUGGUGUGCC--UCG-GCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 164187 0.69 0.588472
Target:  5'- uCGuCGugCGCGCGGAucuCCGCCG-GCAu -3'
miRNA:   3'- uGC-GCugGUGUGCCUc--GGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 90378 0.69 0.617227
Target:  5'- cACGCG-CCGCACagcuuGGAGCCGgCGUuCAc -3'
miRNA:   3'- -UGCGCuGGUGUG-----CCUCGGCgGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 64641 0.69 0.617227
Target:  5'- gGCcauCGACCGCGCGu--CCGCCGUGCu -3'
miRNA:   3'- -UGc--GCUGGUGUGCcucGGCGGCACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.