miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 138401 0.71 0.513404
Target:  5'- cGCGCugcccaagGACCGgACGGAacaacaaCCGCCGUGCGu -3'
miRNA:   3'- -UGCG--------CUGGUgUGCCUc------GGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 141601 0.71 0.513404
Target:  5'- aACGCGACgGCgGCGGGcuccGCUGCCG-GCGg -3'
miRNA:   3'- -UGCGCUGgUG-UGCCU----CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 29272 0.71 0.504276
Target:  5'- -aGCGACCgACGCGuGAGCCGCCu---- -3'
miRNA:   3'- ugCGCUGG-UGUGC-CUCGGCGGcacgu -5'
15709 5' -61.3 NC_004065.1 + 177483 0.71 0.513404
Target:  5'- gGCGgGGgCGCACGGcggGGCCGCCGgggGUc -3'
miRNA:   3'- -UGCgCUgGUGUGCC---UCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 146818 0.71 0.474674
Target:  5'- -gGCGGCgCGCACGGgggacucgagagcgGGCCGCCGggaGCGc -3'
miRNA:   3'- ugCGCUG-GUGUGCC--------------UCGGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 146599 0.71 0.477329
Target:  5'- -gGUGGCCAU-CGGGGCCGUCG-GCGg -3'
miRNA:   3'- ugCGCUGGUGuGCCUCGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 62473 0.7 0.569431
Target:  5'- -gGCGACgGCA-GGAGCgGCCGcgGCGg -3'
miRNA:   3'- ugCGCUGgUGUgCCUCGgCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 113703 0.7 0.569431
Target:  5'- aACGUGACCAUucccguaggaAUGGAGCUcgGCCGagUGCAc -3'
miRNA:   3'- -UGCGCUGGUG----------UGCCUCGG--CGGC--ACGU- -5'
15709 5' -61.3 NC_004065.1 + 124255 0.7 0.5226
Target:  5'- -gGCGACa--GCGGgaAGCCGCCGUcGCAc -3'
miRNA:   3'- ugCGCUGgugUGCC--UCGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 4374 0.7 0.541176
Target:  5'- aGCGCGACgGCggcgGCgGGAGCCGgaGUGCu -3'
miRNA:   3'- -UGCGCUGgUG----UG-CCUCGGCggCACGu -5'
15709 5' -61.3 NC_004065.1 + 109890 0.7 0.5226
Target:  5'- cCGCGGCCGCGucgggggguccCGGcucguccgccgcGGCCGCCGUcGCGu -3'
miRNA:   3'- uGCGCUGGUGU-----------GCC------------UCGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 147476 0.7 0.531859
Target:  5'- cUGCGGCCGCAUGGuGGCCGUCcaGCc -3'
miRNA:   3'- uGCGCUGGUGUGCC-UCGGCGGcaCGu -5'
15709 5' -61.3 NC_004065.1 + 25593 0.7 0.535579
Target:  5'- -gGCGGCUgaGCAgcaggccgaucucgaUGGGGCCuGCCGUGCAg -3'
miRNA:   3'- ugCGCUGG--UGU---------------GCCUCGG-CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 123879 0.7 0.541176
Target:  5'- cACGCG-CCGCA-GGuG-CGCCGUGCAc -3'
miRNA:   3'- -UGCGCuGGUGUgCCuCgGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 168628 0.7 0.559967
Target:  5'- gGCGCugguGCCGCggGCGGAGCCGgCGcgGCGa -3'
miRNA:   3'- -UGCGc---UGGUG--UGCCUCGGCgGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 111915 0.7 0.5226
Target:  5'- cGCGCGGCgACgagagacgccAUGGGcGCCGCCGUcGCGg -3'
miRNA:   3'- -UGCGCUGgUG----------UGCCU-CGGCGGCA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 169378 0.7 0.531859
Target:  5'- gACGCGugCgugGCGCGGGGCaacacgGCCGUGg- -3'
miRNA:   3'- -UGCGCugG---UGUGCCUCGg-----CGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 6488 0.7 0.550547
Target:  5'- uCGCGaACCGCACGGucgggucGCgGCCG-GCAc -3'
miRNA:   3'- uGCGC-UGGUGUGCCu------CGgCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 199501 0.69 0.598037
Target:  5'- uACGUcucuucCCACGCGGcGGCCGCCacGUGCGc -3'
miRNA:   3'- -UGCGcu----GGUGUGCC-UCGGCGG--CACGU- -5'
15709 5' -61.3 NC_004065.1 + 64641 0.69 0.617227
Target:  5'- gGCcauCGACCGCGCGu--CCGCCGUGCu -3'
miRNA:   3'- -UGc--GCUGGUGUGCcucGGCGGCACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.