miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 179283 1.07 0.00206
Target:  5'- cACGCGACCACACGGAGCCGCCGUGCAu -3'
miRNA:   3'- -UGCGCUGGUGUGCCUCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 93533 0.78 0.185666
Target:  5'- gACGCugggguccaGACCGC-CGGAGCCGCCGaUGCu -3'
miRNA:   3'- -UGCG---------CUGGUGuGCCUCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 25507 0.77 0.223656
Target:  5'- -gGCGACCACgACGGucUCGCCGUGCGc -3'
miRNA:   3'- ugCGCUGGUG-UGCCucGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 105190 0.75 0.305831
Target:  5'- cGCGaugGACCAgGCGGAGCCGCUGUuCGu -3'
miRNA:   3'- -UGCg--CUGGUgUGCCUCGGCGGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 152814 0.75 0.305831
Target:  5'- aGCGUGGCCAUcgccguGCGGGgcGCCGCCGcGCAc -3'
miRNA:   3'- -UGCGCUGGUG------UGCCU--CGGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 22486 0.75 0.312511
Target:  5'- gGCGCGACgACGCGGAGCgCGCg--GCGa -3'
miRNA:   3'- -UGCGCUGgUGUGCCUCG-GCGgcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 104537 0.75 0.322047
Target:  5'- cUGCuuCCACACGGAgaacgggcaggugcgGCCGCUGUGCAc -3'
miRNA:   3'- uGCGcuGGUGUGCCU---------------CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 205267 0.73 0.369896
Target:  5'- cGCGcCGGCCaACGgGGGGCCGCCcaacgaGUGCGc -3'
miRNA:   3'- -UGC-GCUGG-UGUgCCUCGGCGG------CACGU- -5'
15709 5' -61.3 NC_004065.1 + 35560 0.73 0.377558
Target:  5'- gGCGUGAgCG-GCGGcGCCGCCGUGCc -3'
miRNA:   3'- -UGCGCUgGUgUGCCuCGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 163420 0.73 0.385325
Target:  5'- aGCGuCGGCaacgcCGCGGuggccGCCGCCGUGCAg -3'
miRNA:   3'- -UGC-GCUGgu---GUGCCu----CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 36106 0.73 0.401173
Target:  5'- cCGUGGCgGCaACGGGGCCGCUGccgGCGg -3'
miRNA:   3'- uGCGCUGgUG-UGCCUCGGCGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 103646 0.73 0.409252
Target:  5'- uGCGCGAgCAgGCGG--UCGCCGUGCGc -3'
miRNA:   3'- -UGCGCUgGUgUGCCucGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 135599 0.72 0.41743
Target:  5'- cACGCG-CCGCugGGAGaCgGCCGUcacGCGg -3'
miRNA:   3'- -UGCGCuGGUGugCCUC-GgCGGCA---CGU- -5'
15709 5' -61.3 NC_004065.1 + 118176 0.72 0.41743
Target:  5'- -gGCGGCCGuCACGGcuGCCGCCGUuCGg -3'
miRNA:   3'- ugCGCUGGU-GUGCCu-CGGCGGCAcGU- -5'
15709 5' -61.3 NC_004065.1 + 41272 0.72 0.425708
Target:  5'- uCGCGAUCGCccuggUGGGcuucGCCGCCGUGCGc -3'
miRNA:   3'- uGCGCUGGUGu----GCCU----CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 167342 0.72 0.434083
Target:  5'- cCGCGACCaACGCGGcggcagacagGGUCGCCGcUGCc -3'
miRNA:   3'- uGCGCUGG-UGUGCC----------UCGGCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 29046 0.72 0.440002
Target:  5'- uCGCGACCcguCACcacgcaccgauccuGGAGCCGCCGcGCu -3'
miRNA:   3'- uGCGCUGGu--GUG--------------CCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 138668 0.72 0.451114
Target:  5'- cCGcCGAgUACACGGGGCaCGUCGUGUg -3'
miRNA:   3'- uGC-GCUgGUGUGCCUCG-GCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 113438 0.71 0.468506
Target:  5'- -aGCGGCgGC-CGGGGggcCCGCCGUGCc -3'
miRNA:   3'- ugCGCUGgUGuGCCUC---GGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 45544 0.71 0.474674
Target:  5'- cCGCGGCgGCgGCGGcAGCCGCCcagaaacauucugaGUGCAu -3'
miRNA:   3'- uGCGCUGgUG-UGCC-UCGGCGG--------------CACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.