Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15709 | 5' | -61.3 | NC_004065.1 | + | 164776 | 0.69 | 0.597079 |
Target: 5'- gGCGUgcagggaGAUCAUGCGGAuguagGUCGCCGUGCu -3' miRNA: 3'- -UGCG-------CUGGUGUGCCU-----CGGCGGCACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 139856 | 0.69 | 0.597079 |
Target: 5'- -gGCGACgGCggaggcgGCGGAGCCGgCG-GCAg -3' miRNA: 3'- ugCGCUGgUG-------UGCCUCGGCgGCaCGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 199501 | 0.69 | 0.598037 |
Target: 5'- uACGUcucuucCCACGCGGcGGCCGCCacGUGCGc -3' miRNA: 3'- -UGCGcu----GGUGUGCC-UCGGCGG--CACGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 104903 | 0.69 | 0.598037 |
Target: 5'- -gGCGACgGCGCGGuGgUGCCGgcgGCGu -3' miRNA: 3'- ugCGCUGgUGUGCCuCgGCGGCa--CGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 169727 | 0.69 | 0.617227 |
Target: 5'- uCGCGACCugcACAuCGGGGUCGUCG-GCu -3' miRNA: 3'- uGCGCUGG---UGU-GCCUCGGCGGCaCGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 90378 | 0.69 | 0.617227 |
Target: 5'- cACGCG-CCGCACagcuuGGAGCCGgCGUuCAc -3' miRNA: 3'- -UGCGCuGGUGUG-----CCUCGGCgGCAcGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 64641 | 0.69 | 0.617227 |
Target: 5'- gGCcauCGACCGCGCGu--CCGCCGUGCu -3' miRNA: 3'- -UGc--GCUGGUGUGCcucGGCGGCACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 87538 | 0.69 | 0.62684 |
Target: 5'- aGCGCGuGCCAgACGGgguuAGCCGCC-UGUc -3' miRNA: 3'- -UGCGC-UGGUgUGCC----UCGGCGGcACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 47728 | 0.69 | 0.636457 |
Target: 5'- aGCGUGGCCuugauCACGGGGUCagaggccaugGCCGgGCAg -3' miRNA: 3'- -UGCGCUGGu----GUGCCUCGG----------CGGCaCGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 165886 | 0.68 | 0.646071 |
Target: 5'- gGCGaGGCCGCACGcgcuGCCGUCGUGg- -3' miRNA: 3'- -UGCgCUGGUGUGCcu--CGGCGGCACgu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 191094 | 0.68 | 0.646071 |
Target: 5'- cCGUcuuGAUCACuCGG-GUCGCCGUGCGu -3' miRNA: 3'- uGCG---CUGGUGuGCCuCGGCGGCACGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 88412 | 0.68 | 0.655675 |
Target: 5'- cCGCcACCGCcggcaGCGGAgcccGCCGCCGUcGCGu -3' miRNA: 3'- uGCGcUGGUG-----UGCCU----CGGCGGCA-CGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 65624 | 0.68 | 0.655675 |
Target: 5'- cACGCuggaccaggagGACCugACGGAcccGCUGCCGcUGCc -3' miRNA: 3'- -UGCG-----------CUGGugUGCCU---CGGCGGC-ACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 130048 | 0.68 | 0.674826 |
Target: 5'- gACGaCGACC-CGCGGcccgAGCaCGCCGcgGCGg -3' miRNA: 3'- -UGC-GCUGGuGUGCC----UCG-GCGGCa-CGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 105562 | 0.68 | 0.674826 |
Target: 5'- gGCGCaGCgGCACGGcgcGCCGUCG-GCGg -3' miRNA: 3'- -UGCGcUGgUGUGCCu--CGGCGGCaCGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 38455 | 0.68 | 0.683408 |
Target: 5'- cGCGCGccgaucACCGCACGcgugcggaagaguGAGCCGCCcuUGCu -3' miRNA: 3'- -UGCGC------UGGUGUGC-------------CUCGGCGGc-ACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 137930 | 0.68 | 0.684359 |
Target: 5'- gACGCG-CCggGCuCGGAGCUGCUG-GCGc -3' miRNA: 3'- -UGCGCuGG--UGuGCCUCGGCGGCaCGU- -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 148133 | 0.68 | 0.684359 |
Target: 5'- cACGcCGACCucaGCACGc--CCGCCGUGCc -3' miRNA: 3'- -UGC-GCUGG---UGUGCcucGGCGGCACGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 115202 | 0.68 | 0.684359 |
Target: 5'- cCGUGGCCGCcgcgACGGGGCauacCGCCGgGCu -3' miRNA: 3'- uGCGCUGGUG----UGCCUCG----GCGGCaCGu -5' |
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15709 | 5' | -61.3 | NC_004065.1 | + | 161368 | 0.68 | 0.684359 |
Target: 5'- uACGcCGACUGCGCGuacgccucGGCCGCCuGUGCc -3' miRNA: 3'- -UGC-GCUGGUGUGCc-------UCGGCGG-CACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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