miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 71173 0.68 0.684359
Target:  5'- aACGUGACCGCGuCGGucAGCaGCC-UGCAc -3'
miRNA:   3'- -UGCGCUGGUGU-GCC--UCGgCGGcACGU- -5'
15709 5' -61.3 NC_004065.1 + 197073 0.68 0.688162
Target:  5'- cCGCGAcgucgacgcccgcauCCGCGCgGGAGCCGaCCG-GCc -3'
miRNA:   3'- uGCGCU---------------GGUGUG-CCUCGGC-GGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 197763 0.68 0.693854
Target:  5'- -aGCGGgCACuCGGAGCCGuCCGaugaugGCGg -3'
miRNA:   3'- ugCGCUgGUGuGCCUCGGC-GGCa-----CGU- -5'
15709 5' -61.3 NC_004065.1 + 126266 0.68 0.693854
Target:  5'- uGCGCGACgGuC-CGGAGgccCCGCCGcGCGa -3'
miRNA:   3'- -UGCGCUGgU-GuGCCUC---GGCGGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 99937 0.68 0.693854
Target:  5'- gACGCcgGACCGCcgcgGCGGcGGCUGCUGcUGCGa -3'
miRNA:   3'- -UGCG--CUGGUG----UGCC-UCGGCGGC-ACGU- -5'
15709 5' -61.3 NC_004065.1 + 99850 0.67 0.703304
Target:  5'- -aGCGuCUGCGCcccGAucGCCGCCGUGCGa -3'
miRNA:   3'- ugCGCuGGUGUGc--CU--CGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 207991 0.67 0.719242
Target:  5'- cCGCGGCCuGCcCGGGGCCguggccggguuaguGCCGgcgGCGa -3'
miRNA:   3'- uGCGCUGG-UGuGCCUCGG--------------CGGCa--CGU- -5'
15709 5' -61.3 NC_004065.1 + 129614 0.67 0.722036
Target:  5'- uGCGCGGUCAgCGCGGAGaacuggacCCGCCG-GCu -3'
miRNA:   3'- -UGCGCUGGU-GUGCCUC--------GGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 30074 0.67 0.722036
Target:  5'- gACGgGACCGCcgugGCGGAGCgcgCGCUGaUGUg -3'
miRNA:   3'- -UGCgCUGGUG----UGCCUCG---GCGGC-ACGu -5'
15709 5' -61.3 NC_004065.1 + 8266 0.67 0.728531
Target:  5'- cCGUGACCuuucugcucaucggACugauCGGGGCCGCgGUGUu -3'
miRNA:   3'- uGCGCUGG--------------UGu---GCCUCGGCGgCACGu -5'
15709 5' -61.3 NC_004065.1 + 31531 0.67 0.731304
Target:  5'- cGCGgGGCUaccccgGCAUGGAGCUGCUGgugGUg -3'
miRNA:   3'- -UGCgCUGG------UGUGCCUCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 201022 0.67 0.738664
Target:  5'- cCGCGugCGCGCGGcgccucgccaccGCCGCCGg--- -3'
miRNA:   3'- uGCGCugGUGUGCCu-----------CGGCGGCacgu -5'
15709 5' -61.3 NC_004065.1 + 68166 0.67 0.73958
Target:  5'- uCGCGGCgGCgcgcgcgACGGAGCUGUCG-GCc -3'
miRNA:   3'- uGCGCUGgUG-------UGCCUCGGCGGCaCGu -5'
15709 5' -61.3 NC_004065.1 + 8738 0.67 0.740495
Target:  5'- aACGUGACgAC-CGGAgGCCGUgGUGgCGg -3'
miRNA:   3'- -UGCGCUGgUGuGCCU-CGGCGgCAC-GU- -5'
15709 5' -61.3 NC_004065.1 + 58619 0.67 0.740495
Target:  5'- gACGCG--CGCgGCGGAGUCGCCGgucucGCGg -3'
miRNA:   3'- -UGCGCugGUG-UGCCUCGGCGGCa----CGU- -5'
15709 5' -61.3 NC_004065.1 + 67589 0.67 0.740495
Target:  5'- gACGCuGAucUCGCcguCGGAGCUGCUgGUGCAg -3'
miRNA:   3'- -UGCG-CU--GGUGu--GCCUCGGCGG-CACGU- -5'
15709 5' -61.3 NC_004065.1 + 77742 0.67 0.749604
Target:  5'- uGCGCaacGCCACgaccACGGuguGCCuGCUGUGCGa -3'
miRNA:   3'- -UGCGc--UGGUG----UGCCu--CGG-CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 64433 0.66 0.757724
Target:  5'- uCGCGGCCACGCaGAcGCugaggaacugucgCGCCGUGg- -3'
miRNA:   3'- uGCGCUGGUGUGcCU-CG-------------GCGGCACgu -5'
15709 5' -61.3 NC_004065.1 + 216013 0.66 0.758621
Target:  5'- gAUGUGACCACACacguGGucaAGCCgGUCGUGUu -3'
miRNA:   3'- -UGCGCUGGUGUG----CC---UCGG-CGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 135062 0.66 0.758621
Target:  5'- uACGCGGCagcCGCGGAGCgGgCCccGCAg -3'
miRNA:   3'- -UGCGCUGgu-GUGCCUCGgC-GGcaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.