miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15709 5' -61.3 NC_004065.1 + 65461 0.66 0.78505
Target:  5'- aGCGCGAagCGguCGGcGCCGCCGccgGCu -3'
miRNA:   3'- -UGCGCUg-GUguGCCuCGGCGGCa--CGu -5'
15709 5' -61.3 NC_004065.1 + 68330 0.66 0.78505
Target:  5'- uCGUGGCUGCG-GGAGCUGCUGcaGCAg -3'
miRNA:   3'- uGCGCUGGUGUgCCUCGGCGGCa-CGU- -5'
15709 5' -61.3 NC_004065.1 + 109595 0.66 0.78505
Target:  5'- gGCGUaucaGGCCGCGCucgacccccGGGCCGCgGUGCc -3'
miRNA:   3'- -UGCG----CUGGUGUGc--------CUCGGCGgCACGu -5'
15709 5' -61.3 NC_004065.1 + 187306 0.66 0.78505
Target:  5'- cUGCGAUCACugGGGcggaggagcGCuCGCCGaccucUGCAg -3'
miRNA:   3'- uGCGCUGGUGugCCU---------CG-GCGGC-----ACGU- -5'
15709 5' -61.3 NC_004065.1 + 194296 0.66 0.78505
Target:  5'- cCGCGAUCugGCGccGAGUCGCCa-GCGg -3'
miRNA:   3'- uGCGCUGGugUGC--CUCGGCGGcaCGU- -5'
15709 5' -61.3 NC_004065.1 + 131917 0.66 0.776352
Target:  5'- cCGCGACUACACGacGGGUUccuuggGCCuGUGCAu -3'
miRNA:   3'- uGCGCUGGUGUGC--CUCGG------CGG-CACGU- -5'
15709 5' -61.3 NC_004065.1 + 166150 0.66 0.776352
Target:  5'- gGCGcCGGCgGCAgCGGcGCCgacGUCGUGCAc -3'
miRNA:   3'- -UGC-GCUGgUGU-GCCuCGG---CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 110295 0.66 0.776352
Target:  5'- cGCGCGACCcggccguCACGGucucgcagcucuGGCCGgggcUCGUGCu -3'
miRNA:   3'- -UGCGCUGGu------GUGCC------------UCGGC----GGCACGu -5'
15709 5' -61.3 NC_004065.1 + 125623 0.66 0.776352
Target:  5'- uGCGCG-CCugguagaaguGCAC-GAGCCGCCGcgugGCGu -3'
miRNA:   3'- -UGCGCuGG----------UGUGcCUCGGCGGCa---CGU- -5'
15709 5' -61.3 NC_004065.1 + 188510 0.66 0.776352
Target:  5'- cCGCGACuCugGCGGGaCCGcCCGcGCGc -3'
miRNA:   3'- uGCGCUG-GugUGCCUcGGC-GGCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 115039 0.66 0.776352
Target:  5'- cGCGCGGCCGC-CaGGGCCGagG-GCAa -3'
miRNA:   3'- -UGCGCUGGUGuGcCUCGGCggCaCGU- -5'
15709 5' -61.3 NC_004065.1 + 163090 0.66 0.76754
Target:  5'- gGCGagGGCCGCACcgagaacugGGGGCCcggcugGCUGUGCGc -3'
miRNA:   3'- -UGCg-CUGGUGUG---------CCUCGG------CGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 95151 0.66 0.76754
Target:  5'- -aGCGACaguucuCGuCGccGCCGCCGUGCAg -3'
miRNA:   3'- ugCGCUGgu----GU-GCcuCGGCGGCACGU- -5'
15709 5' -61.3 NC_004065.1 + 85092 0.66 0.76754
Target:  5'- uACGUGAUCuuCACGGAGCUGaucuucuucugCGUGCu -3'
miRNA:   3'- -UGCGCUGGu-GUGCCUCGGCg----------GCACGu -5'
15709 5' -61.3 NC_004065.1 + 209298 0.66 0.765764
Target:  5'- cCGUGAUCGCcgucgucgccguCGGuGCCGUCGUGUg -3'
miRNA:   3'- uGCGCUGGUGu-----------GCCuCGGCGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 216013 0.66 0.758621
Target:  5'- gAUGUGACCACACacguGGucaAGCCgGUCGUGUu -3'
miRNA:   3'- -UGCGCUGGUGUG----CC---UCGG-CGGCACGu -5'
15709 5' -61.3 NC_004065.1 + 91180 0.66 0.758621
Target:  5'- -gGCGACgGcCGCGGAagcGCCGUcggCGUGCGc -3'
miRNA:   3'- ugCGCUGgU-GUGCCU---CGGCG---GCACGU- -5'
15709 5' -61.3 NC_004065.1 + 91664 0.66 0.758621
Target:  5'- gGCGCGAUgACGacgGGGGUCGCCuuGUcGCAg -3'
miRNA:   3'- -UGCGCUGgUGUg--CCUCGGCGG--CA-CGU- -5'
15709 5' -61.3 NC_004065.1 + 114867 0.66 0.758621
Target:  5'- -gGCGACg--ACGGuGCCGCCGgccgGCGg -3'
miRNA:   3'- ugCGCUGgugUGCCuCGGCGGCa---CGU- -5'
15709 5' -61.3 NC_004065.1 + 79621 0.66 0.758621
Target:  5'- cCGCuGCgCGCGCGGAcGCUGCgggCGUGCGu -3'
miRNA:   3'- uGCGcUG-GUGUGCCU-CGGCG---GCACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.